Input parameters:

  Query = ENSMUSP00000020457 (Len=361)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020457, Len=361):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQDYERRLLRQIIIQNENTVPCVSEMRRTLTPANSPVSSPSKHGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDA 80  
WD40-rpts                                                                                      

Query       81 TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPDDGNDVSPYSLSPVSNKSQKL 160 
WD40-rpts                                                            (_________________WD 1____

Query      161 LRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSER 240 
WD40-rpts      ____________)                                        (___________________WD 2___

Query      241 GNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320 
WD40-rpts      ________________)   (________________WD 3_______________)         (_____________

Query      321 WSTDHQLLASGGNDNKVSHCSALTQAHKCATWPGPSTPMSW 361 
WD40-rpts      __WD 4______________)                    

4 WD40-repeats found in QUERY=ENSMUSP00000020457 (Len=361):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   135-173      3.61  263.74  0.01725       12.5%      5.89
  WD 2:  Seg  7   214-257      7.85  438.92  7.6e-05       32.5%     52.45
  WD 3:  Seg 11   261-297      6.86  397.94  0.00027       37.5%     49.68
  WD 4:  Seg 15   307-341      7.90  440.87  7.1e-05       27.5%     42.78

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  135-173    -KRS----SPDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISK
   WD 2  214-257    ACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWD
   WD 3  261-297    -GKK----LSMLEGHTARVGALAWNAD--QLSSGSRDRMILQRD
   WD 4  307-341    ---------RRLQGHRQEVCGLKWSTDHQLLASGGNDNKVSHCS

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD