Input parameters:

  Query = ENSMUSP00000020490 (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020490, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVVY 80  
WD40-rpts                (_________________WD 1________________)   (__________________WD 2_____

Query       81 SSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGL 160 
WD40-rpts      ____________)   (_________________WD 3________________)(_________________WD 4___

Query      161 IFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKA 240 
WD40-rpts      ______________)        (_________________WD 5________________)   (______________

Query      241 VTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 313 
WD40-rpts      ____WD 6__________________)   (_________________WD 7_________________)   

7 WD40-repeats found in QUERY=ENSMUSP00000020490 (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-49       9.33  499.90  1.1e-05       22.5%     53.97
  WD 2:  Seg  6    53-93       7.77  435.62  8.4e-05       27.5%     49.62
  WD 3:  Seg 10    97-135     10.29  539.77  3.3e-06       37.5%     54.49
  WD 4:  Seg 14   136-175      7.98  444.42  6.4e-05       22.5%     51.26
  WD 5:  Seg 18   184-222      8.39  461.38  3.8e-05       22.5%     55.27
  WD 6:  Seg 22   226-267      9.08  489.57  1.6e-05       37.5%     57.27
  WD 7:  Seg 26   271-310      7.68  431.87  9.4e-05       22.5%     44.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-49     -FRVAKVFRE-NSDK---INCFDFSPNGETVI--SSSDDDSIVLYD
   WD 2   53-93     -GKPKRTLYS-KKYG---VDLIRYTHAANTVVYSSNKIDDTIRYLS
   WD 3   97-135    -NKYIRYFPG-HSKR---VVALSMSPVDDTFI--SGSLDKTIRLWD
   WD 4  136-175    LRSPNCQGLM-HLQG---KPVCSFDPEGLIFA--AGVNSEMVKLYD
   WD 5  184-222    -FATFKMQYD-RTCE---WTGLKFSNDGKLIL--ISTNGSFIRLID
   WD 6  226-267    -GVVMHTFGG-YANSKAVTLEASFTPDSQFIM--IGSEDGKIHVWN
   WD 7  271-310    -GIKVAVLDGKHTGP---ITCLQFNPKFMTFA--SACSNMAFWLPT

   WD40 Template    TGECLRTLSG-HTSG---VTSVSFSPDGKRLV--SGSEDGTIKVWD