Input parameters:

  Query = ENSMUSP00000020640 (Len=317)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020640, Len=317):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160 
WD40-rpts      __________)   (_________________WD 3________________)    (__________________WD 4

Query      161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240 
WD40-rpts      _________________)   (_________________WD 5________________)   (________________

Query      241 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317 
WD40-rpts      WD 6_______________)            (_________________WD 7________________)      

7 WD40-repeats found in QUERY=ENSMUSP00000020640 (Len=317):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.68  473.19  2.6e-05       32.5%     55.53
  WD 2:  Seg  5    53-91      10.10  531.71  4.2e-06       45.0%     53.48
  WD 3:  Seg  9    95-133     10.84  562.36  1.6e-06       50.0%     55.49
  WD 4:  Seg 13   138-178      8.15  451.28  5.1e-05       30.0%     53.49
  WD 5:  Seg 17   182-220      9.90  523.46  5.5e-06       35.0%     54.01
  WD 6:  Seg 21   224-260      6.65  389.29  0.00035       32.5%     54.03
  WD 7:  Seg 25   273-311      7.72  433.38  9.0e-05       25.0%     42.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     QMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWK
   WD 2   53-91     -GIPQRALRGHSHFVSDVVISSD-GQF--ALSGSWDGTLRLWD
   WD 3   95-133    -GTTTRRFVGHTKDVLSVAFSSD-NRQ--IVSGSRDKTIKLWN
   WD 4  138-178    -CKYTVQDESHSEWVSCVRFSPN-SSNPIIVSCGWDKLVKVWN
   WD 5  182-220    -CKLKTNHIGHTGYLNTVTVSPD-GSL--CASGGKDGQAMLWD
   WD 6  224-260    -GKHLYTLDGG-DIINALCFSPN-RYW--LCAAT-GPSIKIWD
   WD 7  273-311    -EVISTSSKAEPPQCTSLAWSAD-GQT--LFAGYTDNLVRVWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-GKR--LVSGSEDGTIKVWD