Input parameters:

  Query = ENSMUSP00000021091 (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000021091, Len=410):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFT 80  
WD40-rpts                                                                                      

Query       81 SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160 
WD40-rpts                       (_________________WD 1________________)   (_________________WD 

Query      161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 
WD40-rpts      2________________)   (_________________WD 3________________)   (________________

Query      241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 
WD40-rpts      _WD 4________________)   (___________________________WD 5_______________________

Query      321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 
WD40-rpts      ___)   (_________________WD 6________________)   (_________________WD 7_________

Query      401 DQTVKVWECR 410 
WD40-rpts      _______)  

7 WD40-repeats found in QUERY=ENSMUSP00000021091 (Len=410):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    98-136     10.36  542.77  3.0e-06       52.5%     50.05
  WD 2:  Seg  6   140-178     10.81  561.21  1.7e-06       52.5%     56.14
  WD 3:  Seg 10   182-220     11.00  568.90  1.3e-06       47.5%     56.89
  WD 4:  Seg 14   224-262     10.24  537.50  3.5e-06       37.5%     53.65
  WD 5:  Seg 18   266-324      7.87  439.74  7.4e-05       45.0%     53.53
  WD 6:  Seg 22   328-366     10.65  554.72  2.1e-06       45.0%     56.36
  WD 7:  Seg 26   370-408     10.21  536.35  3.7e-06       40.0%     52.65

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   98-136    PPEKYALSGHRSPVTRVIFHPV--------------------FSVMVSASEDATIKVWD
   WD 2  140-178    GDFERTLKGHTDSVQDISFDHS--------------------GKLLASCSADMTIKLWD
   WD 3  182-220    FECIRTMHGHDHNVSSVAIMPN--------------------GDHIVSASRDKTIKMWE
   WD 4  224-262    GYCVKTFTGHREWVRMVRPNQD--------------------GTLIASCSNDQTVRVWV
   WD 5  266-324    KECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD
   WD 6  328-366    GMCLMTLVGHDNWVRGVLFHSG--------------------GKFILSCADDKTLRVWD
   WD 7  370-408    KRCMKTLNAHEHFVTSLDFHKT--------------------APYVVTGSVDQTVKVWE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPD--------------------GKRLVSGSEDGTIKVWD