Input parameters:

  Query = ENSMUSP00000021139 (Len=1011)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000021139, Len=1011):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRFLRTGHDPARERLKRDLFQFNKTVEHGFPHQPSALGYSPSLRILAIGTRSGAVKLYGAPGVEFMGLHKENNAVLQIH 80  
WD40-rpts                            (________________WD 1________________)  (_________________

Query       81 FLPGQCQLVTLLDDNSLHLWSLKVKGGVSELQEEESFTLRGPPGAAPSATQVTEILPHSSGELLYLGTESGNVFVVQLPG 160 
WD40-rpts      WD 2________________)                  (________________WD 3________________)   

Query      161 FRTLHDRTICSDEVLQWLPEEARHRRVFEMVEALQEHPRDPNQILIGYSRGLVVIWDLQGSRALSHFLSSQQLENASWQR 240 
WD40-rpts                    (___________________WD 4__________________)  (_________________WD 

Query      241 DGCLIVTCHSDGSHCQWPVSSDTQNPEPLRSSIPYGPFPCKAITKIFWLTTRQGLPFTIFQGGMPRASYGDRHCISVVHN 320 
WD40-rpts      5________________)                                                              

Query      321 GQQTAFDFTSRVIDFTVLSEADPAAAFDDPYALVVLAEEELVVIDLQTPGWPPVQLPYLASLHCSAITCSHHVSNIPLKL 400 
WD40-rpts                                                                                      

Query      401 WERIIAAGSRQNSHFSTMEWPIDGGTSLAPPPPQRDLLLTGHEDGTVRFWDASGVCLRLLYKLSTVRVFLTDTDPSENLI 480 
WD40-rpts                  (_________________WD 6________________)                             

Query      481 AQGEDEWPPLRKVGSFDPYSDDPRLGIQKIFLCKYSGYLAVAGTAGQVLVLELNDEAAEHAVEQVEADLLQDQEGYRWKG 560 
WD40-rpts                   (_________________WD 7________________)                            

Query      561 HERLAARPGPVCFEAGFQPFVLVQCQPPAVVTSLALHSEWRLVAFGTSHGFGLFDHQQRRQVFVKCTLHPSDQLALEGPL 640 
WD40-rpts                                                                                      

Query      641 SRVKSLKKSLRQSFRRMRRSRVSSHKRRPGGPTGEAQAQAVNIKAERTGLQNMELAPVQRKIEARSAEDSFTGFVRTLYF 720 
WD40-rpts                                                                                      

Query      721 ADTYLRDSSRHCPSLWAGTNGGTVYAFSLRVPPAERRTDEPVRAEQAKEIQLMHRAPVVGILVLDGHNVPLPEPLEVAHD 800 
WD40-rpts                                                                                      

Query      801 LSKSPDMQGSHQLLVVSEEQFKVFTLPKVSAKLKLKLTALEGSRVRRVGVAHFGSCRAEDYGEHHLAVLTNLGDIQVVSM 880 
WD40-rpts                                                                                      

Query      881 PLLKPQVRYSCIRREDVSGIASCVFTKYGQGFYLISPSEFERFSLSTKWLVEPRCLVDSTKAKKHNRPSNGNGTGLKMTS 960 
WD40-rpts                                                                                      

Query      961 SGHVRNSKSQSDGDGVLKEIQSTLEGDRRSYGNWHPHRVAVGCRLSNGEAE 1011
WD40-rpts                                                         

7 WD40-repeats found in QUERY=ENSMUSP00000021139 (Len=1011):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-60       5.74  351.63  0.00114       17.5%     46.37
  WD 2:  Seg  4    63-101      6.68  390.54  0.00034       22.5%     58.00
  WD 3:  Seg  9   120-157      4.90  316.98  0.00333       22.5%     41.50
  WD 4:  Seg 12   175-217      4.52  301.18  0.00543       17.5%     44.72
  WD 5:  Seg 15   220-258      5.84  356.09  0.00099       20.0%     55.26
  WD 6:  Seg 27   413-451      6.13  367.70  0.00069       25.0%     23.98
  WD 7:  Seg 31   494-532      3.68  266.54  0.01582       12.5%     40.79

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-60     FNKT--VE--HGFPHQPSALGYSP-SLRILAIGTRSGAVKLYG
   WD 2   63-101    -GVE--FMGLHKENNAVLQIHFLP-GQCQLVTLLDDNSLHLWS
   WD 3  120-157    RGP----PGAAPSATQVTEILPHS-SGELLYLGTESGNVFVVQ
   WD 4  175-217    LQWLPEEARHRRVFEMVEALQEHPRDPNQILIGYSRGLVVIWD
   WD 5  220-258    -GSR--ALSHFLSSQQLENASWQR-DGCLIVTCHSDGSHCQWP
   WD 6  413-451    -SHF--STMEWPIDGGTSLAPPPP-QRDLLLTGHEDGTVRFWD
   WD 7  494-532    -GSF--DPYSDDPRLGIQKIFLCK-YSGYLAVAGTAGQVLVLE

   WD40 Template    TGEC--LRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD