Input parameters:

  Query = ENSMUSP00000021190 (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000021190, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGH 80  
WD40-rpts                      (_____________________WD 1_____________________)      (_________

Query       81 TGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWN 160 
WD40-rpts      ________WD 2_________________)          (_________________WD 3_________________)

Query      161 VGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKSQVVAERARPHEGARPLRAVFTADGKLLSTGFSR 240 
WD40-rpts         (_________________WD 4_________________)(_____________________WD 5___________

Query      241 MSERQLALWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGF 320 
WD40-rpts      _________)(____________________WD 6___________________)                         

Query      321 MPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLKEGYVPPKH 400 
WD40-rpts                             (_____________________WD 7____________________)          

Query      401 RELRVTKRNILDVRPPASPRRSQSASEAPLSQHTLETLLEEIKALRDRVQAQEERITALENMLCELVDGTD 471 
WD40-rpts                                                                             

7 WD40-repeats found in QUERY=ENSMUSP00000021190 (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    17-64       3.13  243.95  0.03165       10.0%     24.73
  WD 2:  Seg  6    71-110      7.26  414.66  0.00016       27.5%     43.17
  WD 3:  Seg  9   121-160      6.94  401.52  0.00024       32.5%     50.17
  WD 4:  Seg 13   164-203      7.61  429.17  0.00010       30.0%     55.55
  WD 5:  Seg 17   204-250      4.01  280.29  0.01035       22.5%     46.52
  WD 6:  Seg 21   251-295      4.69  308.31  0.00435       17.5%     40.50
  WD 7:  Seg 28   344-390      3.30  251.05  0.02547       12.5%     25.80

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-64     QAAKADQAYED---IRVSKV----T-WDSA-FCAVNPKF-LAII-V-EA--------G---GGGAFIVLPL
   WD 2   71-110    -D--------K---NYPLVT----G-HTGP-VLDIDWCPHNDNV-I-AS--------A---SDDTTVMVWQ
   WD 3  121-160    -T--------E---PVITLE----G-HSKR-VGILSWHP-TARNVL-LS--------A---GGDNVIIIWN
   WD 4  164-203    -G--------E---VLLSLD----DIHPDV-IHSVCWNS-NGSL-L-AT--------T---CKDKTLRIID
   WD 5  204-250    PR--------KSQVVAERAR----P-HEGARPLRAVFTA-DGKL-L-ST--------GFSRMSERQLALWD
   WD 6  251-295    PN--------N---FEEPVALQEMD-TSNG-VLLPFYDP-DSSI-VYLC--------G---KGDSSIRYFE
   WD 7  344-390    -C--------E---PIIMTV----P-RKSD-LFQDDLYP-DTPG-P-EPALEADEWLS---GQDAEPVLIS

   WD40 Template    TG--------E---CLRTLS----G-HTSG-VTSVSFSP-DGKR-L-VS--------G---SEDGTIKVWD