Input parameters:

  Query = ENSMUSP00000021287 (Len=620)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000021287, Len=620):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEQVLPELDVAELELQAVIGFNGHVPNGLKCHPDQEHLIYPLGCTVLIQAINTNEQNFLHGHGNNVSCVTISKEGDYIA 80  
WD40-rpts                   (________________WD 1________________)  (___________________WD 2___

Query       81 SGQVTFMGFKADIILWDFKKRELIARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGN 160 
WD40-rpts      ________________)   (__________________WD 3_________________)        (__________

Query      161 ATSVVFSRCRDEMFVTAGNGTIRVWELDLPNRKIWPTECQTGQMKRIVLSTGMADDDSFFYLGTTTGDILKMNPKTKLLA 240 
WD40-rpts      ______WD 4_______________)(_____________________WD 5____________________)      (

Query      241 DTGPVKDKFSLGVSALRCLKMGGLLVGSGAGLLIFCKSPSYKPIKKVQLQGGITSITLRGEGHQFFVGTEESHIYRVNFT 320 
WD40-rpts      ________________WD 6________________)(__________________WD 7_________________)  

Query      321 DFKETLIATCHFEAVQDIVFPFGTAELFATCAKKDIRVWHTMSKRELLRITVPNMTCHGIDFMRDGKSIISAWDDGKIRA 400 
WD40-rpts       (_________________WD 8________________)   (_________________WD 9_______________

Query      401 FAPESGRLMYTINSAHRIGVTAIATTSDCKRIISGGGEGEVRVWQVGCQTQKLEEALKEHKSSVSCIRVKKNNEECVTAS 480 
WD40-rpts      _)   (_________________WD10_________________)     (_________________WD11________

Query      481 TDGTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGSVIRELEGSLSGSINGMDITQEGGHF 560 
WD40-rpts      ________)   (________________WD12________________)   (_________________WD13_____

Query      561 VTGGHDHLVKVWDYNEGEVTHVGVGHSGNIMAMRISPGNQYIVSVSADGAILRWKYPFAS 620 
WD40-rpts      ____________)   (_________________WD14________________)     

14 WD40-repeats found in QUERY=ENSMUSP00000021287 (Len=620):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-51       4.92  317.96  0.00323       12.5%     47.45
  WD 2:  Seg  6    54-97       7.03  404.88  0.00022       30.0%     51.00
  WD 3:  Seg 10   101-141      8.34  459.12  4.0e-05       37.5%     49.43
  WD 4:  Seg 15   150-186      7.67  431.49  9.5e-05       25.0%     43.64
  WD 5:  Seg 18   187-233      5.79  353.88  0.00106       17.5%     46.08
  WD 6:  Seg 22   240-277      5.01  321.54  0.00289       20.0%     42.30
  WD 7:  Seg 25   278-318      6.33  376.15  0.00053       17.5%     53.03
  WD 8:  Seg 29   322-360      7.65  430.67  9.8e-05       17.5%     56.74
  WD 9:  Seg 33   364-402      8.39  461.24  3.8e-05       22.5%     58.48
  WD10:  Seg 37   406-445      8.55  467.81  3.1e-05       37.5%     57.59
  WD11:  Seg 41   451-489      8.84  479.99  2.1e-05       27.5%     54.40
  WD12:  Seg 45   493-530      6.57  385.97  0.00039       15.0%     58.23
  WD13:  Seg 49   534-573      8.39  461.18  3.8e-05       35.0%     59.19
  WD14:  Seg 53   577-615      9.08  489.85  1.6e-05       32.5%     57.22

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-51     -LELQAVI-------G-FNGHV-PNGLKCHPDQEHLIY--PL------GCTVLIQA
   WD 2   54-97     -TNEQNFL-------H-GHGNN-VSCVTISKEGDYIAS--GQVTFMGFKADIILWD
   WD 3  101-141    -RELIARL-------S-LHKGK-IEALAFSPNDLYLVSLGGPD-----DGSVVVWS
   WD 4  150-186    ---GSPAA-------G-LNVGN-ATSVVFSRCRDEMFV--TAG-----NGTIRVWE
   WD 5  187-233    LDLPNRKIWPTECQTG-QMKRI-VLSTGMADDDSFFYL--GTT-----TGDILKMN
   WD 6  240-277    -ADTGPVK-------D-KFSLG-VSALRCLKMGGLLV---GSG-----AGLLIFCK
   WD 7  278-318    SPSYKPIK-------KVQLQGG-ITSITLRGEGHQFFV--GTE-----ESHIYRVN
   WD 8  322-360    -FKETLIA-------T-CHFEA-VQDIVFPFGTAELFA--TCA-----KKDIRVWH
   WD 9  364-402    -KRELLRI-------T-VPNMT-CHGIDFMRDGKSIIS--AWD-----DGKIRAFA
   WD10  406-445    -GRLMYTI------NS-AHRIG-VTAIATTSDCKRIIS--GGG-----EGEVRVWQ
   WD11  451-489    -QKLEEAL-------K-EHKSS-VSCIRVKKNNEECVT--AST-----DGTCIIWD
   WD12  493-530    -LRRNQMI-------L-ANTL--FQCVCYHPEEFQIIT--SGT-----DRKIAYWE
   WD13  534-573    -GSVIREL-------E-GSLSGSINGMDITQEGGHFVT--GGH-----DHLVKVWD
   WD14  577-615    -GEVTHVG-------V-GHSGN-IMAMRISPGNQYIVS--VSA-----DGAILRWK

   WD40 Template    TGECLRTL-------S-GHTSG-VTSVSFSPDGKRLVS--GSE-----DGTIKVWD