Input parameters:

  Query = ENSMUSP00000021572 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000021572, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPTESGSCSTARQAKQKRKSHSLSIRRTNSSEQERTGLPREMLEGQDSKLPSSVRSTLLELFGQIEREFENLYIENLELR 80  
WD40-rpts                                          (______________________________WD 1_________

Query       81 REIDTLNERLAGEGQAIDGAELSKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKTTTSRAICQLVKEYIGHRDGIW 160 
WD40-rpts      ____________________)                               (________________________WD 

Query      161 DVSVTRTQPIVLGTASADHTALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYVVQLPTPQPVAD 240 
WD40-rpts      2_______________________)   (_________________WD 3________________)   (_________

Query      241 TSQQISGEDEIECSDKDEPDIDGDVSSDCPTVRVPLTSLKSHQGVVIAADWLVGGKQVVTASWDRTANLYDVETSELVHS 320 
WD40-rpts      ________WD 4________________)   (_________________WD 5________________)   (_____

Query      321 LTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNM 400 
WD40-rpts      ____________WD 6________________)     (________________WD 7________________)   (

Query      401 RSPIATIRTDSAINRINVCVGQKIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHRRMVCCSAWSEDHPICNLFTCGFDR 480 
WD40-rpts      _________________WD 8________________)(_____________________WD 9________________

Query      481 QAIGWNINIPALLQEK 496 
WD40-rpts      _____)          

9 WD40-repeats found in QUERY=ENSMUSP00000021572 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    37-101      5.42  338.53  0.00170       20.0%     23.33
  WD 2:  Seg  7   133-185      8.02  445.96  6.1e-05       27.5%     41.45
  WD 3:  Seg 11   189-227      9.86  522.01  5.7e-06       32.5%     55.82
  WD 4:  Seg 15   231-269      2.86  232.91  0.04429       12.5%     -8.68
  WD 5:  Seg 17   273-311      8.58  469.16  3.0e-05       27.5%     55.10
  WD 6:  Seg 21   315-353      9.68  514.55  7.2e-06       30.0%     56.23
  WD 7:  Seg 25   359-396      8.31  457.96  4.2e-05       45.0%     50.54
  WD 8:  Seg 29   400-438      7.89  440.53  7.2e-05        7.5%     48.99
  WD 9:  Seg 33   439-486      6.35  377.13  0.00051       20.0%     42.06

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-101    -GL------PREMLE------------GQDSKLPSSVRSTLLE--LFGQIEREFENLYIENLELRREIDTLNERLAGEGQAIDGAE
   WD 2  133-185    IVS------SFKTTTSRAICQLVKEYIGHRDGIWDVSVTRTQP-IVL--------------------------GTASADHTALLWS
   WD 3  189-227    -GK------CLVKYA------------GHVGSVNSIKFHPSEQ--LA--------------------------LTASGDQTAHIWR
   WD 4  231-269    -QL------PTPQPV------------ADTSQQISGEDEIECS--DK--------------------------DEPDIDGDVSSDC
   WD 5  273-311    -RV------PLTSLK------------SHQGVVIAADWLVGGK--QV--------------------------VTASWDRTANLYD
   WD 6  315-353    -SE------LVHSLT------------GHDQELTHCCTHPTQR--LV--------------------------VTSSRDTTFRLWD
   WD 7  359-396    -IH------SVNVFQ------------GHTDTVTSAVFTV-GD--NV--------------------------VSGSDDRTVKVWD
   WD 8  400-438    -MR------SPIATI------------RTDSAINRINVCVGQK--II--------------------------ALPHDNRQVRLFD
   WD 9  439-486    MSGVRLARLPRSSRQ------------GHRRMVCCSAWSEDHPICNL--------------------------FTCGFDRQAIGWN

   WD40 Template    TGE------CLRTLS------------GHTSGVTSVSFSPDGK--RL--------------------------VSGSEDGTIKVWD