Input parameters:

  Query = ENSMUSP00000022205 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000022205, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWKESMAVGLTPSTLSPLKEDKAIPMFTNTVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQAADVFNFEETVYSHHMSP 80  
WD40-rpts                      (__________________WD 1_________________)(___________________WD 

Query       81 AATKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQHNG 160 
WD40-rpts      2___________________)   (_________________WD 3_________________)           (____

Query      161 KKSQAAESANTAHNGKVNGLCFTSDGLHLLTIGTDNRMRLWNSSSGDNTLVNYGKVCNDSRKGLQFAVSCGCSSEFVFVP 240 
WD40-rpts      _________________WD 4____________________)          (________________WD 5_______

Query      241 HGSTIAVYAVHSGERLAMLKGHYKSVDCCVFQPNFQELYSGSRDCNILAWVPPSYEPVPDDDDEAPAKSQLNPAFADAWS 320 
WD40-rpts      ________)   (_________________WD 6________________)                             

Query      321 SSDEDG 326 
WD40-rpts            

6 WD40-repeats found in QUERY=ENSMUSP00000022205 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    17-57       9.53  508.49  8.7e-06       32.5%     47.84
  WD 2:  Seg  7    58-101      6.28  373.97  0.00057       17.5%     53.50
  WD 3:  Seg 11   105-144      8.99  486.20  1.7e-05       37.5%     56.20
  WD 4:  Seg 16   156-202      8.68  473.16  2.6e-05       20.0%     47.05
  WD 5:  Seg 20   213-249      7.01  404.33  0.00022       15.0%     45.68
  WD 6:  Seg 23   253-291     10.01  528.31  4.7e-06       40.0%     56.01

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-57     PL-------KE-DKAIPMFTNTVETVQWYPHDTGM---FTSSSFDKTLKVWD
   WD 2   58-101    TN-------TLQAADVFNFEETVYSHHMSP-AATKHCLVAVGTRGPKVQLCD
   WD 3  105-144    -G-------SC-SHILQGHRQEILAVSWSP-RHDY--ILATASADSRVKLWD
   WD 4  156-202    DQHNGKKSQAA-ESANTAHNGKVNGLCFTS-DGLH---LLTIGTDNRMRLWN
   WD 5  213-249    YG-----------KVCNDSRKGLQFAVSCG-CSSE---FVFVPHGSTIAVYA
   WD 6  253-291    -G-------ER-LAMLKGHYKSVDCCVFQP-NFQE---LYSGSRDCNILAWV

   WD40 Template    TG-------EC-LRTLSGHTSGVTSVSFSP-DGKR---LVSGSEDGTIKVWD