Input parameters:

  Query = ENSMUSP00000022226 (Len=646)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000022226, Len=646):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATESGSDSQLRRRRRRDPEGSEKTELSEREPALAVAGSEENDDENEERWVGPLPVEATLAKKRKVLEFERVYLDNLPSA 80  
WD40-rpts                                                                                 (____

Query       81 SMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVF 160 
WD40-rpts      ______________WD 1__________________) (___________________WD 2__________________

Query      161 DVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHVSPLTQIRLNPVYKAVVS 240 
WD40-rpts      )                                              (___________________WD 3_________

Query      241 SDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSICFSPDGKKIATIGSDRKVRIFRFLTGKLMRVFDE 320 
WD40-rpts      __________)(__________________________WD 4_________________________)            

Query      321 SLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLVNIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRV 400 
WD40-rpts                                                                                      

Query      401 MQLALFQGIAKKHRAAATIEMKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKTADSDRDVFNEKPSKEEVMA 480 
WD40-rpts                                                                                      

Query      481 ATQAEGPKRVSDSAIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGG 560 
WD40-rpts                                                                                      

Query      561 EFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSI 640 
WD40-rpts                                                                                      

Query      641 INITVK 646 
WD40-rpts            

4 WD40-repeats found in QUERY=ENSMUSP00000022226 (Len=646):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    76-117      3.52  259.87  0.01942       20.0%     35.44
  WD 2:  Seg  4   119-161      5.99  362.02  0.00082       25.0%     54.48
  WD 3:  Seg 12   208-251      3.54  260.80  0.01888       27.5%     38.39
  WD 4:  Seg 16   252-308      4.07  282.82  0.00957       25.0%     49.62

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   76-117    NL--------PSASMY----ERSYMHRD---------VITHVVCTKTD-FIITASHDGHVKFWK
   WD 2  119-161    IE-----EGIEFVKHF----RS---HLG---------VIESIAVSSEGALFCSVGDDKAMKVFD
   WD 3  208-251    GR--------GDNQPLHIFDKL---HVS---------PLTQIRLNPVYKAVVSSDKSGMIEYWT
   WD 4  252-308    GPPHEYKFPKNVNWEY----KT---DTDLYEFAKCKAYPTSICFSPDGKKIATIGSDRKVRIFR

   WD40 Template    TG--------ECLRTL----SG---HTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD