Input parameters:

  Query = ENSMUSP00000022909 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000022909, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVKMLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLA 80  
WD40-rpts              (___________________WD 1___________________)   (_________________WD 2___

Query       81 SVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGMCTRFCGTSFFTVGDDKTVKQWKMDGPGYGEEEEPLYTVLGKTVYT 160 
WD40-rpts      ______________)   (_________________WD 3________________)      (________________

Query      161 GIDHHWKDPVFATCGQQVDIWDEQRTSPVCSMNWGFDSISSVKFNPVETFLLGSCASDRNIVLYDMRQATPLKKVILEMR 240 
WD40-rpts      _WD 4________________)   (_________________WD 5_________________)   (___________

Query      241 TNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVY 320 
WD40-rpts      ______WD 6________________)    (_________________WD 7________________)(_________

Query      321 HTKRMQHVMCVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSI 400 
WD40-rpts      __________WD 8__________________)                                               

Query      401 YSQIQEQRVMKEARRRKEMNRRKHSKPGSVPIVSERKKHVVAVVK 445 
WD40-rpts                                                   

8 WD40-repeats found in QUERY=ENSMUSP00000022909 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     9-52       3.49  258.89  0.02002        5.0%     33.17
  WD 2:  Seg  5    56-95       8.45  463.78  3.5e-05       32.5%     52.08
  WD 3:  Seg  9    99-137      9.09  489.94  1.5e-05       25.0%     52.87
  WD 4:  Seg 13   144-182      7.12  408.62  0.00019       17.5%     46.53
  WD 5:  Seg 17   186-225      7.20  412.12  0.00017       22.5%     55.05
  WD 6:  Seg 21   229-267      5.26  331.90  0.00209       12.5%     55.76
  WD 7:  Seg 25   272-310      9.20  494.85  1.3e-05       32.5%     52.29
  WD 8:  Seg 29   311-353      7.51  424.84  0.00012       20.0%     51.59

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-52     NPDNYVR---ETKLDIQRVPRNYDPTLHP-FE-VPREYVRALNATKLER
   WD 2   56-95     -KPFLAS---LD----GHRDGVNCLAKHP-KSLASVLSGACDGEVKIWN
   WD 3   99-137    -RKCIRT---IQ----AHEGFVRGMCTRF-CG-TSFFTVGDDKTVKQWK
   WD 4  144-182    -GEEEEP---LY----TVLGKTVYTGIDH-HW-KDPVFATCGQQVDIWD
   WD 5  186-225    -TSPVCS---MN----WGFDSISSVKFNPVET-FLLGSCASDRNIVLYD
   WD 6  229-267    -ATPLKK---VI----LEMR-TNTICWNPMEA-FNFTAANEDYNLYTFD
   WD 7  272-310    -DTPVMV---HM----DHVSAVLDVDYSP-TG-KEFVSASFDKSIRIFP
   WD 8  311-353    VDKSRSREVYHT----KRMQHVMCVKWTS-DS-KYIMCGSDEMNIRLWK

   WD40 Template    TGECLRT---LS----GHTSGVTSVSFSP-DG-KRLVSGSEDGTIKVWD