Input parameters:

  Query = ENSMUSP00000022992 (Len=996)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000022992, Len=996):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQSTDLGNKESGKIWHRKPSPATHDGIIVNIVHSTSEYHPKVLRFLNVAFDGSGDSFIAGDHQGNIYVFDLHGNRFNLVQ 80  
WD40-rpts                                        (_______________WD 1_______________)  (_______

Query       81 RTAQACTALAFNLRRKSEFLVALADYSIKCFDTVTKELVSWMRGHESSVCSISVHASGRYAITTSSDTAQLWDLDTFQRK 160 
WD40-rpts      __________WD 2_________________)   (________________WD 3________________)(______

Query      161 RKLNIRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLFCKYQLPGPPEGSNILYKVFAVTRDGRILAAGGKSNHLHL 240 
WD40-rpts      _____________WD 4__________________)   (___________________WD 5_________________

Query      241 WCLEATGLFRIIQMPAKVRAVRHLEFLPDSFDAGSNQVLGVLSQDGIMRFVNIQTCKLLFEIGTVEEGISSSVISPHGRY 320 
WD40-rpts      _)(______________________WD 6______________________)   (_________________WD 7___

Query      321 IASIMENGSLNVYSVQALTQEINKPPPPLVKVIEDLPSNTVSSSNLKMKIMPGRVQRPARCKESKIPTRVLKQDLTGDLE 400 
WD40-rpts      _____________)(_________________WD 8_________________)                          

Query      401 NKENELSEGLNKKRLQILLKGYGEYPTKYRMFIWRSLLQLPENHTAFSSLVDKGTHAAYLSLQKKYPIKSRKLLRVLQRT 480 
WD40-rpts                                                                                      

Query      481 LSALAHWSAIFSDTPYLPLLAFPFVKLFQNNQLICFEVVATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHF 560 
WD40-rpts                                                                                      

Query      561 IDRDITSQVYAWPLLETLFSEVLTREEWLRLFDNIFSNHPSFLLMTVVAYSTCSRAPLLNCTLKNDFEYFFHHRNNLDIN 640 
WD40-rpts                                                                                      

Query      641 VVIREVYHLMETTPADIHPNSMLDAFVALTKGQYPIFNQYPKFIVDYQTREWERIRNDELDFLRERQTVENMQAEVDEQR 720 
WD40-rpts                                                                                      

Query      721 AKDEAWYQKQELLRRAEETRREILLQEEEKMAQQRQRLAAVKRELEIKEIHLQDAARRRLLKLQQDQREMELRRLEDEIE 800 
WD40-rpts                                                                                      

Query      801 RKVQMRDQEIAATAKDLEIRQLELEAQKRLYEKDLTTSQEAVAKEIREDTDAHRRKAALEEHMFQKLLENSQMGGRRAQR 880 
WD40-rpts                                                                                      

Query      881 WKEAEEKEFHLQSAKKASALSDASRKWFLRQETSAALEHEEMPWLQRQYMDSAYLPQTSRLHDVSDMDPSTHIFSRNYPT 960 
WD40-rpts                                                                                      

Query      961 EWNHMEHDLLKNVRDLRRRLTARARNSCRHPHLLVT 996 
WD40-rpts                                          

8 WD40-repeats found in QUERY=ENSMUSP00000022992 (Len=996):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    35-70       5.15  327.32  0.00241       25.0%     45.21
  WD 2:  Seg  7    73-112      4.28  291.55  0.00731       20.0%     55.08
  WD 3:  Seg 11   116-153      7.11  408.16  0.00020       32.5%     51.94
  WD 4:  Seg 15   154-196      5.34  335.10  0.00190       22.5%     52.16
  WD 5:  Seg 19   200-242      4.75  311.01  0.00400       22.5%     52.19
  WD 6:  Seg 23   243-292      3.82  272.41  0.01320       20.0%     54.36
  WD 7:  Seg 27   296-334      6.46  381.38  0.00045       25.0%     57.40
  WD 8:  Seg 31   335-374      4.76  311.23  0.00397        7.5%     36.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-70     TSE--------YH---PKVLR----FLNVAFDGS------GD-SFIAGDHQGNIYVFD
   WD 2   73-112    -GNR----FNLVQ---RTAQA----CTALAFNLR------RKSEFLVALADYSIKCFD
   WD 3  116-153    -KEL----VSWMR---GHESS----VCSISVHAS------GR-YAITTSSD-TAQLWD
   WD 4  154-196    LDTF----QRKRKLNIRQSVG----IQKVFFLPL------SN-TILSCFKDNSIFAWE
   WD 5  200-242    -LFC----KYQLP---GPPEGSNILYKVFAVTRD------GR-ILAAGGKSNHLHLWC
   WD 6  243-292    LEATGLFRIIQMP---AKVRA----VRHLEFLPDSFDAGSNQ-VLGVLSQDGIMRFVN
   WD 7  296-334    -CKL----LFEIG---TVEEG----ISSSVISPH------GR-YIASIMENGSLNVYS
   WD 8  335-374    VQAL----TQEIN---KPPPP----LVKVIEDLP------SN-TVSSSNLKMKIMPGR

   WD40 Template    TGEC----LRTLS---GHTSG----VTSVSFSPD------GK-RLVSGSEDGTIKVWD