Input parameters:
Query = ENSMUSP00000023217 (Len=732)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000023217, Len=732):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGACGKPHMSPASLPGKRRLEPDQELQIQEPPLLSDPDSSLSDSEESVFSGLEDLGSDSSEEDTEGVAGSSGDEDNHRA 80
WD40-rpts
Query 81 EETSEELAQAAPLCSRTEEAGALAQDEYEEDSSDEEDIRNTVGNVPLAWYDEFPHVGYDLDGKRIYKPLRTRDELDQFLD 160
WD40-rpts
Query 161 KMDDPDFWRTVQDKMTGRDLRLTDEQVALVHRLQRGQFGDSGFNPYEPAVDFFSGDIMIHPVTNRPADKRSFIPSLVEKE 240
WD40-rpts
Query 241 KVSRMVHAIKMGWIKPRRPHDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESYNPPPEYLPTEEERSAWMQQE 320
WD40-rpts (
Query 321 PVERKLNFLPQKFPSLRTVPAYSRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSD 400
WD40-rpts _________________WD 1________________) (_______
Query 401 LVRCLSVSPGGQWLASGSDDGTLKLWEVATARCMKTVHVGGVVRSIAWNPNPTICLVAAAMDDAVLLLNPALGDRLLVGS 480
WD40-rpts ________WD 2______________) (_________________WD 3________________)(__________
Query 481 TDQLLEAFTPPEEPALQPARWLEVSEEEHQRGLRLRICHSKPVTQVTWHGRGDYLAVVLSSQEHTQVLLHQVSRRRSQSP 560
WD40-rpts ______WD 4_______________) (__________________WD 5__________________) (_____
Query 561 FRRSHGQVQCVAFHPSRPFLLVASQRSIRIYHLLRQELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKLVWFDLDLSTK 640
WD40-rpts ___________WD 6________________) (_________________WD 7________________) (_
Query 641 PYKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQPWVF 720
WD40-rpts ________________WD 8________________) (___________________WD 9_______
Query 721 SSGADGTIRLFS 732
WD40-rpts ___________)
9 WD40-repeats found in QUERY=ENSMUSP00000023217 (Len=732):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 320-358 3.95 277.73 0.01120 12.5% 34.24
WD 2: Seg 8 393-427 8.91 482.86 1.9e-05 40.0% 49.55
WD 3: Seg 11 431-469 4.08 283.25 0.00945 20.0% 53.88
WD 4: Seg 15 470-506 3.95 277.65 0.01123 17.5% 27.45
WD 5: Seg 18 510-551 4.86 315.48 0.00348 25.0% 46.63
WD 6: Seg 22 555-592 4.55 302.42 0.00522 17.5% 52.53
WD 7: Seg 26 596-634 7.33 417.30 0.00015 25.0% 56.34
WD 8: Seg 30 639-677 7.78 436.13 8.2e-05 27.5% 52.94
WD 9: Seg 34 690-732 5.95 360.58 0.00086 35.0% 45.75
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 320-358 -EPVERKLNFLPQ----KFPSLRTVPAYSR-FI---QERFERCLDLYL
WD 2 393-427 -----LVYRGHSD----LVRCLSVSPGGQW-LA---SGSDDGTLKLWE
WD 3 431-469 -ARCMKTVHVG-G----VVRSIAWNPNPTICLV---AAAMDDAVLLLN
WD 4 470-506 PALGDRLLVGSTD----QLLEAFTPPEEPA-LQ---PAR---WLEVSE
WD 5 510-551 -QRGLRLRICHSK----PVTQVTWHGRGDY-LAVVLSSQEHTQVLLHQ
WD 6 555-592 -RRSQSPFRRSHG----QVQCVAFHPSRPF-LL---VAS-QRSIRIYH
WD 7 596-634 -QELTKKLMPNCK----WVSSMAVHPAGDN-II---CGSYDSKLVWFD
WD 8 639-677 -TKPYKVLRHHKK----ALRAVAFHPRYPL-FA---SGSDDGSVIVCH
WD 9 690-732 -LVPVKVLKGHTLTRDLGVLDVAFHPTQPW-VF---SSGADGTIRLFS
WD40 Template TGECLRTLSGHTS----GVTSVSFSPDGKR-LV---SGSEDGTIKVWD