WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSMUSP00000023217    [Mus musculus]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSMUSP00000023217 (Len=732)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000023217, Len=732):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGACGKPHMSPASLPGKRRLEPDQELQIQEPPLLSDPDSSLSDSEESVFSGLEDLGSDSSEEDTEGVAGSSGDEDNHRA 80  
WD40-rpts                                                                                      

Query       81 EETSEELAQAAPLCSRTEEAGALAQDEYEEDSSDEEDIRNTVGNVPLAWYDEFPHVGYDLDGKRIYKPLRTRDELDQFLD 160 
WD40-rpts                                                                                      

Query      161 KMDDPDFWRTVQDKMTGRDLRLTDEQVALVHRLQRGQFGDSGFNPYEPAVDFFSGDIMIHPVTNRPADKRSFIPSLVEKE 240 
WD40-rpts                                                                                      

Query      241 KVSRMVHAIKMGWIKPRRPHDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESYNPPPEYLPTEEERSAWMQQE 320 
WD40-rpts                                                                                     (

Query      321 PVERKLNFLPQKFPSLRTVPAYSRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSD 400 
WD40-rpts      _________________WD 1________________)                                  (_______

Query      401 LVRCLSVSPGGQWLASGSDDGTLKLWEVATARCMKTVHVGGVVRSIAWNPNPTICLVAAAMDDAVLLLNPALGDRLLVGS 480 
WD40-rpts      ________WD 2______________)   (_________________WD 3________________)(__________

Query      481 TDQLLEAFTPPEEPALQPARWLEVSEEEHQRGLRLRICHSKPVTQVTWHGRGDYLAVVLSSQEHTQVLLHQVSRRRSQSP 560 
WD40-rpts      ______WD 4_______________)   (__________________WD 5__________________)   (_____

Query      561 FRRSHGQVQCVAFHPSRPFLLVASQRSIRIYHLLRQELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKLVWFDLDLSTK 640 
WD40-rpts      ___________WD 6________________)   (_________________WD 7________________)    (_

Query      641 PYKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQPWVF 720 
WD40-rpts      ________________WD 8________________)            (___________________WD 9_______

Query      721 SSGADGTIRLFS 732 
WD40-rpts      ___________)



9 WD40-repeats found in QUERY=ENSMUSP00000023217 (Len=732):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   320-358      3.95  277.73  0.01120       12.5%     34.24
  WD 2:  Seg  8   393-427      8.91  482.86  1.9e-05       40.0%     49.55
  WD 3:  Seg 11   431-469      4.08  283.25  0.00945       20.0%     53.88
  WD 4:  Seg 15   470-506      3.95  277.65  0.01123       17.5%     27.45
  WD 5:  Seg 18   510-551      4.86  315.48  0.00348       25.0%     46.63
  WD 6:  Seg 22   555-592      4.55  302.42  0.00522       17.5%     52.53
  WD 7:  Seg 26   596-634      7.33  417.30  0.00015       25.0%     56.34
  WD 8:  Seg 30   639-677      7.78  436.13  8.2e-05       27.5%     52.94
  WD 9:  Seg 34   690-732      5.95  360.58  0.00086       35.0%     45.75
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  320-358    -EPVERKLNFLPQ----KFPSLRTVPAYSR-FI---QERFERCLDLYL
   WD 2  393-427    -----LVYRGHSD----LVRCLSVSPGGQW-LA---SGSDDGTLKLWE
   WD 3  431-469    -ARCMKTVHVG-G----VVRSIAWNPNPTICLV---AAAMDDAVLLLN
   WD 4  470-506    PALGDRLLVGSTD----QLLEAFTPPEEPA-LQ---PAR---WLEVSE
   WD 5  510-551    -QRGLRLRICHSK----PVTQVTWHGRGDY-LAVVLSSQEHTQVLLHQ
   WD 6  555-592    -RRSQSPFRRSHG----QVQCVAFHPSRPF-LL---VAS-QRSIRIYH
   WD 7  596-634    -QELTKKLMPNCK----WVSSMAVHPAGDN-II---CGSYDSKLVWFD
   WD 8  639-677    -TKPYKVLRHHKK----ALRAVAFHPRYPL-FA---SGSDDGSVIVCH
   WD 9  690-732    -LVPVKVLKGHTLTRDLGVLDVAFHPTQPW-VF---SSGADGTIRLFS

   WD40 Template    TGECLRTLSGHTS----GVTSVSFSPDGKR-LV---SGSEDGTIKVWD


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Last modified: 09 Jan 2019