Input parameters:

  Query = ENSMUSP00000023526 (Len=1001)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000023526, Len=1001):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPYQPTALAFDPV 80  
WD40-rpts                                                                    (_______________WD

Query       81 QKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYC 160 
WD40-rpts       1______________)  (_________________WD 2________________)     (________________

Query      161 HLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSK 240 
WD40-rpts      _WD 3________________)             (__________________WD 4_________________)  (_

Query      241 RAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP 320 
WD40-rpts      ________________WD 5________________)                                           

Query      321 FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFEN 400 
WD40-rpts                                                                                      

Query      401 PYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITGHADGTIKFWDASAM 480 
WD40-rpts                                    (____________________WD 6____________________)    

Query      481 TLQMLYKLKTSKVFEKQKAGEGKQTCELVEEDPFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEVTTEIVSLEVRLQC 560 
WD40-rpts                       (___________________WD 7___________________) (_______________WD

Query      561 DVEDIITPEPETSPPFPDLSSQLPPSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQLVWVDGEPPQQ 640 
WD40-rpts       8_______________)                                                      (_______

Query      641 ITSLSISSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQFIAGLTELNDSPVPLELERCK 720 
WD40-rpts      _______WD 9______________)                                                      

Query      721 SPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEETRENSYNRSRSSSISSID 800 
WD40-rpts                                                                                      

Query      801 KDSKEAITALYFMESFARKNDSTVSPCLFVGTSLGMVVLISLNLPSSDEQRFTEPVVVLPSGTFLSLKGAVLTFSCMDRT 880 
WD40-rpts                                                                                      

Query      881 GSLMQPPYEVWRDPNNTDENEKTWKRKLVMNYSSSSQEMGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQADV 960 
WD40-rpts                                                                                      

Query      961 VVMCNSACLACFCANGHIMIMRYMVYLLLTDNHNNASKVKW 1001
WD40-rpts                                               

9 WD40-repeats found in QUERY=ENSMUSP00000023526 (Len=1001):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    63-97       6.11  367.22  0.00070       25.0%     44.30
  WD 2:  Seg  5   100-138      7.13  409.27  0.00019       25.0%     55.84
  WD 3:  Seg  9   144-182      6.23  372.03  0.00060       20.0%     56.30
  WD 4:  Seg 14   196-236      7.68  431.73  9.4e-05       32.5%     49.94
  WD 5:  Seg 18   239-277      7.17  410.71  0.00018       15.0%     56.69
  WD 6:  Seg 32   431-476      5.94  360.02  0.00088       25.0%     35.57
  WD 7:  Seg 37   498-541      4.73  309.98  0.00413        5.0%     46.38
  WD 8:  Seg 40   543-578      3.32  251.77  0.02491       10.0%     -10.45
  WD 9:  Seg 42   633-666      3.25  248.94  0.02717       17.5%     40.57

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-97     T---------VRH------GFPYQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 2  100-138    -G----VDCYCQH------ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 3  144-182    -P----AILHSLK------FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 4  196-236    NK----AIELSTK------THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 5  239-277    -S----KRAELRV------YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 6  431-476    IG----VKHKKQGYSNKEWPVSGGAWNLGAQT-YPEIIITGHADGTIKFWD
   WD 7  498-541    KAGEGKQTCELVE------EDPFAVQMIYWCP-ESRIFCVSGVSAYVIIYK
   WD 8  543-578    S--------RHEV------TTEIVSLEVRLQC-DVEDIITPEPETSPPFPD
   WD 9  633-666    ----------VDG------EPPQQITSLSISS-AYGIVAFGNCTGLVVVDF

   WD40 Template    TG----ECLRTLS------GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD