WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000023631 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000023631 (Len=2304) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000023631, Len=2304): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEPSPARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQ 80
WD40-rpts
Query 81 ICQRIGPMLDKEVPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGPPPSLVEIHRGRQLTG 160
WD40-rpts (_________________WD 1________________)
Query 161 CSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYEN 240
WD40-rpts (_________________WD 2________________) (_________________WD 3_
Query 241 TLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEK 320
WD40-rpts _______________)(____________________WD 4____________________) (________
Query 321 PRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQL 400
WD40-rpts __________WD 5_________________)(___________________WD 6___________________)(___
Query 401 EWRSILLDMSARISGDTSSEEERFMKPKVTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
WD40-rpts _______________________WD 7__________________________) (_________________WD 8_
Query 481 SRIMLSAGHDGSIFIWDITKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 560
WD40-rpts ________________) (__________________WD 9__________________)
Query 561 HTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENSADEHLVPQLGYVATSDGEVIEQIISL 640
WD40-rpts
Query 641 HTNDSGDASPESSVLDGMIRQLQQQQDQRLGVDQDGTANGLPSGEGTPRRGSFRRLSLDIQSPPNIGLRRSGQVEGVRQM 720
WD40-rpts
Query 721 HQNAPRSQIATERDLQAWKRRVVVPEAPPGMFRRLEDIRIERGEEERNLYVIGRKKKTFQVPQKSNSMVLVSQSRQRTCR 800
WD40-rpts
Query 801 RKYANYSRRNADQCELSSGNESSGSVRHETSYDQSEGSCSSEDDEWRNDRRSGSDSDSSSDSSSQYSDWTADTGINLQPP 880
WD40-rpts
Query 881 LRMSCRRRVTRFCSTSEDEMSMENISPPKRRRKRRKESKPKRESLRRMTPAELANMEHLYEFHPPVWITDTTLRKSPFVP 960
WD40-rpts
Query 961 QMGDEVMYFRQGHEAYIEAVRRNNIYELNPHKEPWRKMDLRDQELVKIVGLRYEVGPPTLCCLKLAFIDPATGRLTDKSF 1040
WD40-rpts
Query 1041 SIRYHDMPDVIDFLVLRQFYDEARQRNWQPCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTETEKLSPW 1120
WD40-rpts
Query 1121 DMEPIPDNVDPPEELGASISVTSDELEKLLYKPQEGEWGQRSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCT 1200
WD40-rpts
Query 1201 VVAYPTDLYTIRMRLVNRFYRRLSALIWEVRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQDCTNISELCNTSDND 1280
WD40-rpts
Query 1281 EDDSADDLDDSDLPKTSSGRRKVHNWKRRSRASGCIESDWRRQCKALLILIFQCEDSEPFRQPVDLDEYPDYRDIIDTPM 1360
WD40-rpts
Query 1361 DFGTVRETLEAGNYDSPVEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISFDFKIGQKFKEKLRRSQRF 1440
WD40-rpts
Query 1441 KQRQNCNGAVPGDRRRRNVKQKQFKSQTKVIPQLMCPPSQSTSSKVPLSATRKTSAGVSSGFTSGDSSDSAGSLERVRRQ 1520
WD40-rpts
Query 1521 RPEVLRSGSVLFGSEMEDFLATSSSSSASNSSEESKASPGARESSLRSGVLRGSNLGVTRTRAARRKAGSVSLENGCGRK 1600
WD40-rpts
Query 1601 ATRKRVYLSDSDNNSVETDENLKNRKCGSSRKVLRKCAAVAASKIKLMSDAEDSSSESPCSGRKLPHRNASAVARKKLLH 1680
WD40-rpts
Query 1681 NSDDQSLKSETEELKDQNQSLLISGPHSVHNSISDSESDSDLRATRKTWNANGCTSHTAATCKTKSRPIESSEEDSRCHG 1760
WD40-rpts
Query 1761 SDHGPSSTGDPSTSGQKLRADSISEEADSEPESSVLCKNTHLCKKAKILSDSEDCEEKCGERRGPEVEGSPVSEALREAI 1840
WD40-rpts
Query 1841 LAPQCLSHRGSETDVDSDGGAVREKSYSNENGSVSLENGQRRKVSRKSSSDKESNLQVTQKSPKDRSSPSRITQRASVAT 1920
WD40-rpts
Query 1921 DKMKLTSDAEDLSLESVCTRSKRRRKKPARFACTPAKTALSSEEKHAHCEVPEAQPACRNKLPEPEHQDSAENPSQAASA 2000
WD40-rpts
Query 2001 DLNSGGGSSFEQRKSIQSRQMGAVCVRPPPKTQSSSAGLSQENARSQTLDSETSLPSESVLTQKATVESNFEEELNYGLR 2080
WD40-rpts
Query 2081 RWNGRRLRTYGKAPLSRTAQVTPSLQASAEVGVKRRRMHPEVDGEDVPGQMGSSGCGPDTSPKASDLGSVTDSDVDCTDN 2160
WD40-rpts
Query 2161 TQTQRKKKRKGKARVLSKESVRKDREPHTKMRPCMLNEKDAVQMHSDTLKAKTVPEKVPRRCATVAANKIKMMCNLKEVV 2240
WD40-rpts
Query 2241 SGPENVGIRTISRKLPYRQASAAAKKKLLSVYKEDDAPIHSENEKELYLRRFRSRKEKAQPTPR 2304
WD40-rpts
 9 WD40-repeats found in QUERY=ENSMUSP00000023631 (Len=2304): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 86-124 3.90 275.81 0.01189 20.0% 28.51 WD 2: Seg 6 176-214 8.52 466.68 3.2e-05 35.0% 48.21 WD 3: Seg 10 218-256 8.85 480.32 2.1e-05 30.0% 54.34 WD 4: Seg 14 257-302 7.93 442.29 6.8e-05 42.5% 54.12 WD 5: Seg 18 312-352 4.91 317.54 0.00327 30.0% 49.32 WD 6: Seg 22 353-396 9.43 504.10 1.0e-05 42.5% 54.71 WD 7: Seg 26 397-454 5.44 339.36 0.00166 30.0% 46.29 WD 8: Seg 30 458-497 7.85 439.06 7.5e-05 35.0% 53.54 WD 9: Seg 34 503-544 4.07 282.73 0.00960 20.0% 45.53Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 86-124 GP----M-L---------DKEVPPSISR---------V--TSL-LGA-GRQ----SLLRTAKDCRHTVWK WD 2 176-214 -I----K-M---------HRRILGHLSA---------V--YCVAFDR-TGH----RIFTGSDDCLVKIWS WD 3 218-256 -G----R-L---------LSTLRGHSAE---------I--SDMAVNY-ENT----LIAAGSCDKIIRVWC WD 4 257-302 LR----T-C-------APVAVLQGHTGS---------I--TSLQFSP-MAKGPQRYMVSTGADGTVCFWQ WD 5 312-352 -P----R-P---------LKFTEKPRPG---------VQMLCSSFSV-GGM----FLATGSTDHVIRMYF WD 6 353-396 LGFDAPE-K---------IAELESHTDK---------V--DSIQFCN-NGD----RFLSGSRDGTARIWR WD 7 397-454 FE----Q-LEWRSILLDMSARISGDTSSEEERFMKPKV--TMIAWNQ-DDS----TVVTAVNDHVLKVWS WD 8 458-497 -G----Q-L---------LHNLLGHADE---------V--FVLETHPFDSR----IMLSAGHDGSIFIWD WD 9 503-544 KM----KHY---------FNMIEGQGHG--------AV--FDCKFSQ-DGQ----HFACTDSHGHLLIFG WD40 Template TG----E-C---------LRTLSGHTSG---------V--TSVSFSP-DGK----RLVSGSEDGTIKVWD |
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