Input parameters:

  Query = ENSMUSP00000023666 (Len=572)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000023666, Len=572):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVITCEIAWHNKEPVYSLDFQHGATWKIHRLASAGVDTAVRIWKLERGPDGKAIVEFLSNLARHTKAVNVVRFSPTGEI 80  
WD40-rpts       (___________________WD 1___________________)              (_______________WD 2_

Query       81 LASGGDDAVILLWKMNDSKEPEQIAFQDEEEAQLNKENWTVVKTLRGHLEDVYDICWATDGNLMTSASVDNTVIIWDVSK 160 
WD40-rpts      _____________)                        (_________________WD 3________________)   

Query      161 GQKISIFNEHKSYVQGVTWDPLGQYIATLSCDRVLRIYNTQKKRVAFNISKMLSGQGPEGEARSFRMFHDDSMKSFFRRL 240 
WD40-rpts      (_________________WD 4________________)                             (___________

Query      241 SFTPDGSLLLTPAGCMESGENVTNTTYVFSRKHLKRPIAHLPCPGKATLAVRCCPVYFELRPVAETEKASEEPSPELVNL 320 
WD40-rpts      ___WD 5______________)(_________________WD 6_________________)(_______________WD

Query      321 PYRMVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCTFVTFEKGELGIPLKEKPVLSIR 400 
WD40-rpts       7_______________)(___________________WD 8__________________)                   

Query      401 TPDTAKKAKNQTHQGSSPGSRSVEGTPSNRTQDPSSPCTTPSPTTQSPAPSAIKDSPSAIPAGKSPLPQPSEEKTLQPAG 480 
WD40-rpts            (_________________WD 9________________)                                   

Query      481 QNMKAPQPRRVTLNTLQTWGKTAPRRINLTPLKTDTVPNPQPNSGTAPSTEEVQPEAPGEPPEEPPELKRPRLEEREGDA 560 
WD40-rpts                                                                                      

Query      561 QNLAPDDSSKTV 572 
WD40-rpts                  

9 WD40-repeats found in QUERY=ENSMUSP00000023666 (Len=572):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-45       6.51  383.43  0.00042       20.0%     55.49
  WD 2:  Seg  5    60-94       8.67  472.60  2.7e-05       37.5%     46.90
  WD 3:  Seg  8   119-157      9.63  512.43  7.7e-06       32.5%     57.41
  WD 4:  Seg 12   161-199      8.99  486.21  1.7e-05       22.5%     51.88
  WD 5:  Seg 18   229-262      5.59  345.75  0.00136       17.5%     28.00
  WD 6:  Seg 20   263-302      6.41  379.33  0.00048       10.0%     45.44
  WD 7:  Seg 24   303-338      4.83  314.36  0.00361       17.5%     30.40
  WD 8:  Seg 27   339-381      7.29  415.85  0.00015       25.0%     54.22
  WD 9:  Seg 32   407-445      5.40  337.56  0.00176       20.0%     -1.50

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-45     KVITC---EIAWHNKEPVYSLDFQHGATWKIHRLASAGVDTAVRIWK
   WD 2   60-94     --------SNLARHTKAVNVVRFSPTGE----ILASGGDDAVILLWK
   WD 3  119-157    -WTVV---KTLRGHLEDVYDICWATDGN----LMTSASVDNTVIIWD
   WD 4  161-199    -GQKI---SIFNEHKSYVQGVTWDPLGQ----YIATLSCDRVLRIYN
   WD 5  229-262    HDD---------SMKSFFRRLSFTPDGS----LLLTPAGCMESGENV
   WD 6  263-302    TNTTY---VFSRKHLKRPIAHLPCPGKA----TLAVRCCPVYFELRP
   WD 7  303-338    VAE------TEKASEEPSPELVNLPYRM----VFAVASED-SVLLYD
   WD 8  339-381    TQQSFPFGYVSNIHYHTLSDISWSSDGA----FLAISSTDGYCTFVT
   WD 9  407-445    -KAKN---QTHQGSSPGSRSVEGTPSNR----TQDPSSPCTTPSPTT

   WD40 Template    TGECL---RTLSGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD