Input parameters:

  Query = ENSMUSP00000024116 (Len=203)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000024116, Len=203):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCRSMIQAQAWVTSKAWPLPASPAVHSAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRT 80  
WD40-rpts                        (________________WD 1_______________)   (_________________WD 2

Query       81 GEYFASGGSDEQVMVWKSNFDIVDYGDMKARRPPPLTSSSGTLPKMDLPVPPGRDRSLESVQGEPQESISMPQTLTSTLE 160 
WD40-rpts      ________________)(____________________WD 3___________________)   (______________

Query      161 HIVGQLDILTQTVSILEQRLTLTEDRLKQCLENQQLIMQRTPP 203 
WD40-rpts      _WD 4_______________)                      

4 WD40-repeats found in QUERY=ENSMUSP00000024116 (Len=203):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    19-55       8.89  481.74  2.0e-05       30.0%     34.53
  WD 2:  Seg  6    59-97      10.28  539.13  3.4e-06       40.0%     52.82
  WD 3:  Seg 10    98-142      6.79  394.98  0.00030       10.0%     40.75
  WD 4:  Seg 14   146-181      5.34  335.16  0.00189       10.0%     32.95

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-55     ---LP-----ASPAVHSAAVNALSFHPSGNYLITASSDSTLKILD
   WD 2   59-97     -GRLL-----YTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK
   WD 3   98-142    SNFDIVDYGDMKARRPPPLTSSSGTLPKMDLPVPPGRDRSLESVQ
   WD 4  146-181    -QESI-----SMPQTLTSTLEHIVGQLD---ILTQTVSILEQRLT

   WD40 Template    TGECL-----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD