Input parameters:

  Query = ENSMUSP00000024206 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000024206, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEMEQLRQEAEQLKKQIADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 ICTGSDDASCRLFDLRADQELTAYSQESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSLKCERVGILSGHDNRVSCLGV 320 
WD40-rpts      _____________)   (__________________WD 6_________________)   (_________________W

Query      321 TADGMAVATGSWDSFLKIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=ENSMUSP00000024206 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-83      10.12  532.54  4.1e-06       40.0%     53.36
  WD 2:  Seg  7    87-125      8.82  479.10  2.2e-05       15.0%     56.74
  WD 3:  Seg 11   133-170      7.61  428.95  0.00010       32.5%     48.43
  WD 4:  Seg 15   174-212     10.04  529.44  4.5e-06       37.5%     55.60
  WD 5:  Seg 19   216-254     10.41  544.59  2.8e-06       32.5%     51.40
  WD 6:  Seg 23   258-298      8.37  460.22  3.9e-05       37.5%     57.18
  WD 7:  Seg 27   302-340      9.86  522.03  5.7e-06       32.5%     50.29

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-83     MRTRRTLRGHL--AKIYAMHWATDSKLLVSASQDGKLIVWD
   WD 2   87-125    TNKVHAIPLRS--SWVMTCAYAPSGNFVACGGLDNMCSIYN
   WD 3  133-170    VKVSRELSAHT--GYLSCCRFLDDNN-IVTSSGDTTCALWD
   WD 4  174-212    GQQKTVFVGHT--GDCMSLAVSPDYKLFISGACDASAKLWD
   WD 5  216-254    GTCRQTFTGHE--SDINAICFFPNGEAICTGSDDASCRLFD
   WD 6  258-298    DQELTAYSQESIICGITSVAFSLSGRLLFAGYDDFNCNVWD
   WD 7  302-340    CERVGILSGHD--NRVSCLGVTADGMAVATGSWDSFLKIWN

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD