Input parameters:

  Query = ENSMUSP00000024837 (Len=413)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000024837, Len=413):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSAGLALCAQTLVVRGGSRFLAFSTTGSDDDCVFTYDCSTAEKKATPEDKGEDGQPADTGSDSILASTFSKSGRYFAL 80  
WD40-rpts      (_________________WD 1________________)             (_________________WD 2______

Query       81 TDDSKRLILFRTKPWQCLSVRMVVRRCTALTFTASEDRVLVADKSGDVYSFSVLEPDGCGRLELGHLSMLLDVAVSPDDQ 160 
WD40-rpts      __________)(__________________WD 3_________________)(___________________WD 4____

Query      161 FVLTADRDEKIRVSWAAAPHSIESFCLGHTEFVSRILVVPSHPELLLSSSGDGTLRLWEYRSGRQLQCCDLAGLQEPGEQ 240 
WD40-rpts      ______________)    (_________________WD 5_________________)           (_________

Query      241 PGHKGLAASRIAFWGQESYVVLLCECVPVVFVFQLDASRQQLVFRQRLTFPHRVWDVVFEEARGLWVLQDCRDAPLVLWR 320 
WD40-rpts      __________WD 6___________________)  (___________________WD 7___________________)

Query      321 PVGGEWQAAPDGAVSPRLCSHLRESWAMLEGSVGTDDSFRSLYKATFDNMTSYLKKKEERLQQQLKKKRQRSPFPGSPEQ 400 
WD40-rpts         (_________________WD 8_________________)                                     

Query      401 TKKACPGQSALSC 413 
WD40-rpts                   

8 WD40-repeats found in QUERY=ENSMUSP00000024837 (Len=413):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.47  381.99  0.00044       15.0%     29.00
  WD 2:  Seg  5    53-91       7.85  438.80  7.6e-05       12.5%     39.44
  WD 3:  Seg  8    92-132      7.58  427.78  0.00011       12.5%     56.47
  WD 4:  Seg 12   133-175      8.38  460.71  3.8e-05       32.5%     44.94
  WD 5:  Seg 15   180-219      8.17  452.24  5.0e-05       30.0%     54.04
  WD 6:  Seg 20   231-274      3.42  255.94  0.02192       10.0%     36.22
  WD 7:  Seg 23   277-320      6.72  392.07  0.00032       17.5%     49.76
  WD 8:  Seg 27   324-363      6.25  372.97  0.00059       17.5%     43.82

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     ----------MASSAGLALCAQTLVVRGG-S-RFL-AFSTT-GSDDDCVFTYD
   WD 2   53-91     -G---E---DGQPADTGSDSILASTFSKS-G-RYF-A---L-TDDSKRLILFR
   WD 3   92-132    TK---P--WQCLSVRMVVRRCTALTFTAS-E-DRV-L---V-ADKSGDVYSFS
   WD 4  133-175    VL---EPDGCGRLELGHLSMLLDVAVSPD-D-QFV-L---T-ADRDEKIRVSW
   WD 5  180-219    -H---S---IESFCLGHTEFVSRILVVPS-HPELL-L---S-SSGDGTLRLWE
   WD 6  231-274    LAGLQE---PGEQPGHKGLAASRIAFWGQ-E-SYV-V---LLCECVPVVFVFQ
   WD 7  277-320    AS---RQQLVFRQRLTFPHRVWDVVFEEARG-LWV-L---Q-DCRDAPLVLWR
   WD 8  324-363    -G---E---WQAAPDGAVSPRLCSHLRES-W-AMLEG---S-VGTDDSFRSLY

   WD40 Template    TG---E---CLRTLSGHTSGVTSVSFSPD-G-KRL-V---S-GSEDGTIKVWD