Input parameters:

  Query = ENSMUSP00000024881 (Len=627)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000024881, Len=627):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWKQGRQLLRQYLQEVGYTDTILDVKSKRVRALLGFSSDVTDREDDKNQDSVINGTEAEVKETAMIGKSELTDSASVLDN 80  
WD40-rpts                                                                                      

Query       81 FKFLESAAADVSDEDEDEDTDGRAKSVIDTSTIVRKKALPDTSEDRDTKEALKEFDFLVTSEEGDNESRSAGDGTDWEKE 160 
WD40-rpts                                                                                      

Query      161 DQCLTPEAWNVDQGVISKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRDVDELPSLQPSVGSPSRPSSSRLPEQELSRA 240 
WD40-rpts                                                                                      

Query      241 DEVEALTFPPSSGKSFIMGADEALESELGLGELAGLTVANEADSLAYDIANNKDALRKTWNPKFTLRSHFDGIRALAFHP 320 
WD40-rpts              (________________________WD 1_______________________)(________________WD

Query      321 IEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVMSSNGEQCYSGGTDGRIQSWSTTNPNVDPY 400 
WD40-rpts       2_______________)              (_________________WD 3________________)         

Query      401 DAYDPSVLRGPLLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWNTTEVAPALSVFNDNQELGIPASVDLVSSDPSHMVAS 480 
WD40-rpts           (_________________WD 4________________)   (___________________WD 5_________

Query      481 FSKGYTSIFNMETQQRVLTLESNVDSTSSSSCQINRVISHPTLPISITAHEDRHIKFYDNNTGKLIHSMVAHLEAVTSLA 560 
WD40-rpts      _________)          (_________________WD 6________________)   (_________________

Query      561 VDPNGLYLMSGSHDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASAGADALAKVFV 627 
WD40-rpts      WD 7________________)   (___________________WD 8__________________)

8 WD40-repeats found in QUERY=ENSMUSP00000024881 (Len=627):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   249-301      6.87  398.26  0.00027       12.5%     31.44
  WD 2:  Seg  7   302-338      9.19  494.40  1.3e-05       32.5%     45.94
  WD 3:  Seg 10   353-391      8.63  471.34  2.8e-05       32.5%     51.68
  WD 4:  Seg 14   406-444      9.03  487.49  1.7e-05       35.0%     47.97
  WD 5:  Seg 17   448-490      5.63  347.34  0.00130       10.0%     50.90
  WD 6:  Seg 22   501-539      7.09  407.45  0.00020       20.0%     40.05
  WD 7:  Seg 25   543-581     10.16  534.36  3.9e-06       35.0%     56.37
  WD 8:  Seg 29   585-627      7.26  414.45  0.00016       22.5%     50.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  249-301    PPSSGKSFIMG----ADEALESELGLGELAGLTVAN----EADSLAYDIANNKDALRKTWN
   WD 2  302-338    ---PKFTLRSH----FD-------------GIRALA----FHPIEPVLITASEDHTLKMWN
   WD 3  353-391    -VEPIYTFRAH----KG-------------PVLCVV----MSSNGEQCYSGGTDGRIQSWS
   WD 4  406-444    -SVLRGPLLGH----TD-------------AVWGLA----YSAAHQRLLSCSADGTLRLWN
   WD 5  448-490    -VAPALSVFND----NQ-------------ELGIPASVDLVSSDPSHMVASFSKGYTSIFN
   WD 6  501-539    ESN-VDSTSSS----SC-------------QINRVI----SHPTLPISITAHEDRHIKFYD
   WD 7  543-581    -GKLIHSMVAH----LE-------------AVTSLA----VDPNGLYLMSGSHDCSIRLWN
   WD 8  585-627    -KTCIQEFTAHRKKFEE-------------SIHDVA----FHPSKCYIASAGADALAKVFV

   WD40 Template    TGECLRTLSGH----TS-------------GVTSVS----FSPDGKRLVSGSEDGTIKVWD