Input parameters:

  Query = ENSMUSP00000025170 (Len=622)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025170, Len=622):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METAPKPGRGVPPKRDKPQAKRKKPRRYWEEETTPAAVATSPGPPRKKARTGESRPPRSKSAHIAQKSRFSKKPPISKTA 80  
WD40-rpts                                                                                      

Query       81 PDWKKPQRTLSGAQDPFPGPVPAPLEEARKFCRIDKSKTLPHSKPKTQSKLEKAEAQEEEASVRAARAELLLAEEPGFLV 160 
WD40-rpts                                                                                      

Query      161 GEDGEDTAKILQTDIVEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAVRD 240 
WD40-rpts                             (_________________WD 1________________)  (_______________

Query      241 IHFLHSEALLAVAQNRWLYIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVSVGKIVTALNVRAGRLS 320 
WD40-rpts      _WD 2________________)(_________________WD 3_________________)   (______________

Query      321 VMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGTFQPLSSRTLP 400 
WD40-rpts      ___WD 4________________)   (_________________WD 5________________)   (__________

Query      401 QGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSGHVHGLQFCPFEDVLGVGHSGGFTSMLVPGAAEP 480 
WD40-rpts      ______WD 6_______________)(_____________________WD 7_____________________)      

Query      481 NFDGLENNPYRSRKQRQEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQKKERIERLGYDPDAKAAFQPKAKQKGRSS 560 
WD40-rpts                                                                                      

Query      561 TASLVKRKKKVMDQEHRDKVRQSLEQQQQKKKQDMAMPPGARPSALDRFVRRAREGGLQVDP 622 
WD40-rpts                                                                    

7 WD40-repeats found in QUERY=ENSMUSP00000025170 (Len=622):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   184-222      6.86  398.17  0.00027       20.0%     53.89
  WD 2:  Seg  8   225-262      4.40  296.38  0.00629       12.5%     51.98
  WD 3:  Seg 12   263-302      7.11  408.35  0.00020       22.5%     56.31
  WD 4:  Seg 16   306-344      7.43  421.60  0.00013       17.5%     54.56
  WD 5:  Seg 20   348-386      8.60  470.07  2.9e-05       25.0%     53.40
  WD 6:  Seg 24   390-426      4.25  290.11  0.00764       12.5%     45.25
  WD 7:  Seg 28   427-474      4.60  304.70  0.00487       17.5%     46.03

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  184-222    -A--------AKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALD
   WD 2  225-262    -T--------KKLMCEINVMEAVRDIHFLHSEALLAVAQ-NRWLYIYD
   WD 3  263-302    NQ--------GIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLD
   WD 4  306-344    -G--------KIVTALNVRAGRLSVMAQNPYNAVIHLGHSNGTVSLWS
   WD 5  348-386    -K--------EPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFD
   WD 6  390-426    -T--------FQPLSSRTLPQGAGHLAFSQRGLLVAGM--GDVVNIWA
   WD 7  427-474    GQGKASPPSLEQPYLTHRLSGHVHGLQFCPFEDVLGVGHSGGFTSMLV

   WD40 Template    TG--------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD