Input parameters:

  Query = ENSMUSP00000025264 (Len=1330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025264, Len=1330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMR 80  
WD40-rpts                                                                                      

Query       81 AIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAH 160 
WD40-rpts                                       (______________WD 1______________)             

Query      161 DSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL 240 
WD40-rpts                (___________________________WD 2___________________________)(_________

Query      241 RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNL 320 
WD40-rpts      __________WD 3___________________)                                (_____________

Query      321 KEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400 
WD40-rpts      ___________WD 4________________________)                                        

Query      401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESSEIEMTIPGLDWGMEE 480 
WD40-rpts                                                                                      

Query      481 VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLK 560 
WD40-rpts                                                                                      

Query      561 IERLAQKQADQIQPPPSSGTPLLGPQPFSGQGPISQIPQGFQQPHPSQQMPLVPQMGPPGPQGQFRAPGPQGQMGPQGPP 640 
WD40-rpts                                                                                      

Query      641 MHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQG 720 
WD40-rpts                                                                                      

Query      721 PPASQGHMGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPASQGIQGPLMGLNPRGMQGPPGPRENQGPAPQGLMIGHP 800 
WD40-rpts                                                                                      

Query      801 PQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPPQGSMLGPPQELRGPSGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQ 880 
WD40-rpts                                                                                      

Query      881 QNPARGPHPSQGPIPFQQQKAPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDTRGPPNHH 960 
WD40-rpts                                                                                      

Query      961 LGPMSERRHEQSGGPEHGPDRGPFRGGQDCRGPPDRRGSHPDFPDDFRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRR 1040
WD40-rpts                                                                                      

Query     1041 GGPGPPFPPDHREFNEGDGRGAARGPPGAWEGRRPGDDRFPRDPDDPRFRGRREESFRRGAPPRHEGRAPPRGRDNFPGP 1120
WD40-rpts                                                                                      

Query     1121 DDFGPEEGFDASDEAARGRDLRGRGRGTPRGGSRKCLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPRPDHPPH 1200
WD40-rpts                                                                                      

Query     1201 DGHSPASRERSSSLQGMDMASLPPRKRPWHDGSGTSEHREMEAQGGPSEDRGSKGRGGPGPSQRVPKSGRSSSLDGDHHD 1280
WD40-rpts                                                                                      

Query     1281 GYHRDEPFGGPPGSSSSSRGARSGSNWGRGSNMNSGPPRRGTSRGSGRGR 1330
WD40-rpts                                                        

4 WD40-repeats found in QUERY=ENSMUSP00000025264 (Len=1330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   114-147      4.01  280.43  0.01031       25.0%     32.35
  WD 2:  Seg  6   171-230      5.95  360.51  0.00086       30.0%     38.56
  WD 3:  Seg 10   231-274      7.08  407.07  0.00020       42.5%     34.36
  WD 4:  Seg 16   307-360      5.46  340.24  0.00162       27.5%     36.57

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  114-147    STNKV--KC-------------------PV--------------------FVVRWTP-EGRRLVTGASSGE--FTLWN
   WD 2  171-230    HNDMW--MLTAD-------------HGGYVKYWQSNMNNVKMFQAHKEAIREASFSP-TDNKFATCSDDGT--VRIWD
   WD 3  231-274    FLRCHEERILRG-------------HGADV--------------------KCVDWHP-TKGLVVSGSKDSQQPIKFWD
   WD 4  307-360    SRDHL--CKLFDIRNLKEELQVFRGHKKEA--------------------TAVAWHPVHEGLFASGGSDGS--LLFWH

   WD40 Template    TGECL--RTLSG-------------HTSGV--------------------TSVSFSP-DGKRLVSGSEDGT--IKVWD