Input parameters:

  Query = ENSMUSP00000025377 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025377, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKCFSRYLPYIFRPPNTILSSSCHTEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHE 80  
WD40-rpts                     (_________________WD 1_________________)                      (__

Query       81 PEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMD 160 
WD40-rpts      __________________WD 2___________________)                                      

Query      161 LMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNT 240 
WD40-rpts          (_________________WD 3________________)            (_________________WD 4___

Query      241 FVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIE 320 
WD40-rpts      _____________)                   (________________WD 5________________)         

Query      321 TYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGG 400 
WD40-rpts           (___________________WD 6___________________)  (_________________WD 7_______

Query      401 KRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN 446 
WD40-rpts      __________)                                   

7 WD40-repeats found in QUERY=ENSMUSP00000025377 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-55       7.10  407.77  0.00020       15.0%     41.61
  WD 2:  Seg  5    78-122      4.48  299.55  0.00571       15.0%     44.44
  WD 3:  Seg 11   165-203      7.64  430.15  9.9e-05       22.5%     50.27
  WD 4:  Seg 16   216-254      6.23  372.02  0.00060       25.0%     38.60
  WD 5:  Seg 20   274-311      6.71  391.99  0.00032       27.5%     41.59
  WD 6:  Seg 24   326-369      5.49  341.51  0.00155       10.0%     43.74
  WD 7:  Seg 27   372-411      4.57  303.27  0.00509       17.5%     25.24

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-55     NTILSSSC---HTEAD----IISTVEFNH--TGELLATGDKG-GRVVIFQ
   WD 2   78-122    SHEPEFDYLKSLEIEE----KINKIRWLPQQNAAYFLLSTND-KTVKLWK
   WD 3  165-203    ATPRRVFA---NAHTY----HINSISVNS--DYETYMS-ADD-LRINLWN
   WD 4  216-254    IKP--ANM---EELTE----VITAAEFHP-HHCNTFVYSSSK-GTIRLCD
   WD 5  274-311    -PSNRSFF---SEIIS----SISDVKFSH--SGRYIMTRD-Y-LTVKVWD
   WD 6  326-369    DYLRSKLC---SLYENDCIFDKFECVWNG--SDSVIMTGSYN-NFFRMFD
   WD 7  372-411    -TKRDVTL---EASRE----NSKPRAILK--PRKVCVGGKRRKDEISVDS

   WD40 Template    TGECLRTL---SGHTS----GVTSVSFSP--DGKRLVSGSED-GTIKVWD