Input parameters:

  Query = ENSMUSP00000025421 (Len=364)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025421, Len=364):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFD 80  
WD40-rpts      (_________________WD 1_________________)(_____________________WD 2______________

Query       81 RTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHEVS 160 
WD40-rpts      ______)               (__________________WD 3_________________)(________________

Query      161 CKLCCSCISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAV 240 
WD40-rpts      __________WD 4__________________________)  (_____________________WD 5___________

Query      241 ATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILK 320 
WD40-rpts      __________)                (_________________WD 6________________)      (_______

Query      321 GNGSPVNGSSQLGNSNPSLSSNIPNLQNSLNGTSASRKAQLSTS 364 
WD40-rpts      __________WD 7________________)             

7 WD40-repeats found in QUERY=ENSMUSP00000025421 (Len=364):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40      10.62  553.50  2.2e-06       30.0%     55.68
  WD 2:  Seg  5    41-87       7.74  434.22  8.7e-05       32.5%     53.26
  WD 3:  Seg  9   103-143      6.46  381.47  0.00045       32.5%     58.18
  WD 4:  Seg 13   144-201      4.85  315.12  0.00352       17.5%     45.33
  WD 5:  Seg 17   204-251      7.01  404.40  0.00022       22.5%     48.60
  WD 6:  Seg 21   268-306      8.35  459.72  4.0e-05       27.5%     54.90
  WD 7:  Seg 25   313-351      6.44  380.79  0.00046       17.5%     43.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MF----V-------ARSIAADHKDLIHDVSFDFH----GRR-----MATCSSDQS------VKVWD
   WD 2   41-87     KS----E--SGDWHCTASWKTHSGSVWRVTWAHP--EFGQV-----LASCSFDRT------AAVWE
   WD 3  103-143    -W----V-------KRTTLVDSRTSVTDVKFAPK--HMGLM-----LATCSADGI------VRVYE
   WD 4  144-201    AP----DVMNLSQWSLQHEVSCKLCCSCISWNPS----SSRAHPPMIAVGSDDSSPNSMAKVQIFE
   WD 5  204-251    ENTRKYA-------KAETLMTVTDPVHDIAFAPNLGRSFHI-----LAVATKDVR------IFTLK
   WD 6  268-306    -I----H-------IVAQFDNHNSQVWRVSWNIT----GTV-----LASSGDDGC------VRLWK
   WD 7  313-351    -W----K-------CTGILKGNGSPVNGSSQLGN----SNP-----SLSSNIPNL------QNSLN

   WD40 Template    TG----E-------CLRTLSGHTSGVTSVSFSPD----GKR-----LVSGSEDGT------IKVWD