Input parameters:

  Query = ENSMUSP00000025642 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000025642, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQD 80  
WD40-rpts                                                                                      

Query       81 EWGWPNSPALPQSSQWPTLSQDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLI 160 
WD40-rpts                                                                              (_______

Query      161 VPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASI 240 
WD40-rpts      _______WD 1_____________)                                                (______

Query      241 PGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQV 320 
WD40-rpts      _________WD 2_______________)   (_________________WD 3________________)   (_____

Query      321 VRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKE 400 
WD40-rpts      ____________WD 4________________)   (__________________WD 5_________________)   

Query      401 RTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYI 480 
WD40-rpts      (_________________WD 6________________)   (_________________WD 7________________

Query      481 CKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 523 
WD40-rpts      _)(_________________WD 8_________________) 

8 WD40-repeats found in QUERY=ENSMUSP00000025642 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   153-185      4.77  311.85  0.00390        7.5%     18.02
  WD 2:  Seg  5   234-269      5.64  347.51  0.00129       20.0%     44.42
  WD 3:  Seg  8   273-311     10.13  533.09  4.1e-06       45.0%     57.12
  WD 4:  Seg 12   315-353      8.92  483.14  1.9e-05       30.0%     58.13
  WD 5:  Seg 16   357-397      8.31  458.05  4.2e-05       40.0%     57.96
  WD 6:  Seg 20   401-439      9.65  513.42  7.5e-06       30.0%     49.09
  WD 7:  Seg 23   443-482      6.02  363.27  0.00079       25.0%     50.27
  WD 8:  Seg 27   483-522      9.69  514.97  7.1e-06       20.0%     57.44

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  153-185    -------LKPQAG-L--IVPQAVPS-SQPSVVGAGEPMDLGELV
   WD 2  234-269    -----GLHSASIP-G--ILALDLCPSDTNKILTGGADKNVVVFD
   WD 3  273-311    -EQILATLKGHTK-K--VTSVVFHP-SQELVFSASPDATIRIWS
   WD 4  315-353    -TSCVQVVRAHES-A--VTGLSLHA-TGDYLLSSSDDQYWAFSD
   WD 5  357-397    -GRVLTKVTDETS-GCSLTCAQFHP-DGLIFGTGTMDSQIKIWD
   WD 6  401-439    -RTNVANFPGHSG-P--ITSIAFSE-NGYYLATAADDSSVKLWD
   WD 7  443-482    -LKNFKTLQLDNNFE--VKSLIFDQ-SGTYLALGGTDVQIYICK
   WD 8  483-522    QWTEILHFTEHSG-L--TTGVAFGH-HAKFIASTGMDRSLKFYS

   WD40 Template    TGECLRTLSGHTS-G--VTSVSFSP-DGKRLVSGSEDGTIKVWD