Input parameters:

  Query = ENSMUSP00000026027 (Len=801)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000026027, Len=801):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGGNVAVAAAAGGDGGTPKPGVAVSAAAPAGAA 80  
WD40-rpts                                                                                      

Query       81 PVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSA 160 
WD40-rpts                                                                                      

Query      161 APEPPGTGASVTSVFSGSASGPAAPGKVASVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQL 240 
WD40-rpts                                                                                      

Query      241 FYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKR 320 
WD40-rpts                                                                                      

Query      321 HLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGK 400 
WD40-rpts                                                                                      

Query      401 PKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVT 480 
WD40-rpts                                                                  (_________________WD

Query      481 DDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLL 560 
WD40-rpts       1________________)(_____________WD 2____________)   (_________________WD 3_____

Query      561 SSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 640 
WD40-rpts      ___________)   (_________________WD 4________________)   (_________________WD 5_

Query      641 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF 720 
WD40-rpts      _______________)   (_________________WD 6________________)   (_________________W

Query      721 SRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP 800 
WD40-rpts      D 7________________)   (_________________WD 8________________)                  

Query      801 Q 801 
WD40-rpts       

8 WD40-repeats found in QUERY=ENSMUSP00000026027 (Len=801):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   461-499      7.88  440.20  7.3e-05       27.5%     54.67
  WD 2:  Seg  9   500-530      4.63  306.08  0.00466       15.0%     41.00
  WD 3:  Seg 12   534-572      9.99  527.34  4.9e-06       45.0%     53.87
  WD 4:  Seg 16   576-614      9.03  487.85  1.7e-05       35.0%     52.04
  WD 5:  Seg 19   618-656      9.24  496.33  1.3e-05       32.5%     48.34
  WD 6:  Seg 23   660-698     10.68  555.91  2.0e-06       40.0%     54.78
  WD 7:  Seg 27   702-740     10.31  540.70  3.2e-06       47.5%     55.08
  WD 8:  Seg 31   744-782      3.44  256.78  0.02136        7.5%     44.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  461-499    SICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWS
   WD 2  500-530    --------VTPKKLRSVKQASDLSLIDKESDDVLERIMD
   WD 3  534-572    ASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS
   WD 4  576-614    FTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA
   WD 5  618-656    YQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD
   WD 6  660-698    GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD
   WD 7  702-740    GLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
   WD 8  744-782    AFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVV

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD