Input parameters:

  Query = ENSMUSP00000026671 (Len=1335)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000026671, Len=1335):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESEMLQSPLMGLGEEDEADLTDWNLPLAFMKKRHCEKIEGSKSLAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTP 80  
WD40-rpts                                                                                      

Query       81 CARLECWIDPLSMGPQKALETIGANLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTV 160 
WD40-rpts                                                                                      

Query      161 NGEVWVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINPNHPLAQMPLPPSMKNC 240 
WD40-rpts                                                                                      

Query      241 IQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAIT 320 
WD40-rpts                                                                                      

Query      321 DTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEG 400 
WD40-rpts                                                                                      

Query      401 TAFRHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFPYVLKLL 480 
WD40-rpts                                                                                      

Query      481 QSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIA 560 
WD40-rpts                                                                                      

Query      561 ICLEQLSDPHPLLRQWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVGNSAERTDHSTTI 640 
WD40-rpts                                                                                      

Query      641 DHNVAMMLAQLINDGSPMVRKELVVALSHLVVQYESNFCTVALQFMEEEKNYPLPSPAATEGGSLTPVRDSPCTPRLRSV 720 
WD40-rpts                                                                                      

Query      721 SSYGNIRAVTTARNLNKSLQNLSLTEESGSSVAFSPGNLSTSSSASSTLGSPENEEYILSFETIDKMRRVSSYSALNSLI 800 
WD40-rpts                                                                                      

Query      801 GVSFNSVYTQIWRVLLHLAADPYPDVSDLAMKVLNSIAYKATVNARPQRILDTSSLTQSAPASPTNKGMHMHQVGGSPPA 880 
WD40-rpts                                                                                      

Query      881 SSTSSCSLTNDVAKQTVSRDLPSSRPGTAGPTGAQYTPHSHQFPRTRKMFDKGPDQTTDDADDAAGHKSFICASMQTGFC 960 
WD40-rpts                                                                                      

Query      961 DWSARYFAQPVMKIPEEHDLESQIRKEREWRFLRNTRVRKQAQQVIQKGITRLDDQIFLNRNPGVPSVVKFHPFTPCIAV 1040
WD40-rpts                                                              (______________WD 1_____

Query     1041 ADKDSICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLNGQDCSLLLTATDDGAIRVWKNFADLEKNPEMVTAWQGLSDMLP 1120
WD40-rpts      _________)   (___________________WD 2___________________)               (_______

Query     1121 TTRGAGMVVDWEQETGLLMSSGDVRIVRIWDTDRETKVQDIPTGADSCVTSLSCDSHRSLIVAGLGDGSIRVYDRRMALS 1200
WD40-rpts      __________WD 3________________)     (________________WD 4________________)      

Query     1201 ECRVMTYREHTAWVVKAYLQKHPEGHIVSVSVNGDVRFFDPRMPESVNVMQIVKGLTALDIHPQANLIACGSMNQFTAIY 1280
WD40-rpts      (_________________WD 5_________________)   (________________WD 6________________

Query     1281 NGNGELINNIKYYDGFMGQRVGAISCLAFHPHWPHLAVGSNDYYISVYSVEKRVR 1335
WD40-rpts      )  (____________________WD 7____________________)      

7 WD40-repeats found in QUERY=ENSMUSP00000026671 (Len=1335):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12  1017-1050     4.78  312.13  0.00386       20.0%     45.07
  WD 2:  Seg 15  1054-1097     6.30  374.90  0.00055       30.0%     52.98
  WD 3:  Seg 20  1113-1151     6.73  392.75  0.00032       17.5%     43.82
  WD 4:  Seg 23  1157-1194     7.59  428.24  0.00011       35.0%     42.28
  WD 5:  Seg 26  1201-1240     6.04  364.34  0.00077       22.5%     46.73
  WD 6:  Seg 29  1244-1281     5.42  338.68  0.00170       15.0%     53.40
  WD 7:  Seg 33  1284-1329     6.62  388.07  0.00037       25.0%     56.75

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1017-1050   -----IFLNRNPG-------VPSVVKF-----HPFTP-CIAVADKD-SICFWD
   WD 2 1054-1097   -GEKLDYFHNGNP-------RYTRVTAMEYLNGQDCS-LLLTATDDGAIRVWK
   WD 3 1113-1151   QG-LSDMLPTTRG-------AGMVVDW-----EQETG-LLMSSGDVRIVRIWD
   WD 4 1157-1194   KVQDIPT--GADS-------CVTSLSC-----DSHRS-LIVAGLGDGSIRVYD
   WD 5 1201-1240   -ECRVMTYREHTA-------WVVKAYL-----QKHPEGHIVSVSVNGDVRFFD
   WD 6 1244-1281   -PESVNVMQIV-K-------GLTALDI-----HPQAN-LIACGSMNQFTAIYN
   WD 7 1284-1329   -GELINNIKYYDGFMGQRVGAISCLAF-----HPHWP-HLAVGSNDYYISVYS

   WD40 Template    TGECLRTLSGHTS-------GVTSVSF-----SPDGK-RLVSGSEDGTIKVWD