Input parameters:

  Query = ENSMUSP00000026833 (Len=790)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000026833, Len=790):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKMSRVSTALSGSALTGRTMHCHLDAPANAISVCRDAAQVVVAGRSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADV 80  
WD40-rpts                    (_________________WD 1________________)   (_____________________WD

Query       81 VWHQMDENLLATAATNGVVVTWNLGRPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFS 160 
WD40-rpts       2____________________)      (_________________WD 3_________________)   (_______

Query      161 GQSESVRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMTTH 240 
WD40-rpts      __________WD 4_________________)    (_________________WD 5_________________)(___

Query      241 RAKEIHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWDVRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKD 320 
WD40-rpts      _________________WD 6____________________)        (________________WD 7_________

Query      321 STLCQHLFRDASQPVERANPEGLCYGLFGDLAFAVKESLVAAESGRKPYAGDRRHPIFFKRKLDPAEPFSGLASSALSVF 400 
WD40-rpts      ______)      (_________________WD 8_________________)                           

Query      401 ETESSGGSMSWFVDTAERYVLAGRPLAELCDHNAKVARELGRNQVAQTWTMLRIIYCSPGLVSSANLNHSVGKGSSCGLP 480 
WD40-rpts                                                                                      

Query      481 LMNSFNLKDMGPGLGSETRLDRSKGDTRSDAALLDSSATLVTNEDNEETEGSDVPADYLLGDVEGEDDELYPLDTEHVHS 560 
WD40-rpts                                                                                      

Query      561 EEPEYVLPQEAFPLRHEIVDTPSGPEHLQDKADSPHVSGNEADTASLAPVDSSSSLLSVSHALYDSRLPPDFFSVLVRDM 640 
WD40-rpts                                                                                      

Query      641 LRFYAEQGDVQMAVSVLIVLGERVRKDIDEQTQEHWYTSYIDLLQRFCLWNVSNEVVKLSTSRAVSCLNQASTTLHVNCS 720 
WD40-rpts                                                                                      

Query      721 HCKRPMSSRGWVCDRCHRCASMCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCEYS 790 
WD40-rpts                                                                            

8 WD40-repeats found in QUERY=ENSMUSP00000026833 (Len=790):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       3.82  272.36  0.01322       17.5%     48.35
  WD 2:  Seg  6    57-103      5.79  353.72  0.00106       17.5%     40.14
  WD 3:  Seg  9   110-149      7.23  413.46  0.00017       32.5%     47.89
  WD 4:  Seg 13   153-192      7.73  434.16  8.8e-05       32.5%     52.78
  WD 5:  Seg 17   197-236      7.83  438.28  7.7e-05       30.0%     50.74
  WD 6:  Seg 21   237-282      5.43  339.06  0.00168       22.5%     41.75
  WD 7:  Seg 25   291-327      5.91  358.74  0.00091       22.5%     47.77
  WD 8:  Seg 28   334-373      4.17  286.91  0.00844       10.0%     19.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -ALTGRT---MHCHLDAPANAISV--C--------R-DAA-QV---VVAG-RSIFKIYA
   WD 2   57-103    -EQFVEK---LNLRVGR-KPSLNL--SCADVVWHQM-DEN-LL---ATAATNGVVVTWN
   WD 3  110-149    -NKQDQL---FTEHKRT-VNKVCF--H--------PTEAH-VL---LSGSQDGFMKCFD
   WD 4  153-192    -KDSVST---FSGQSES-VRDVQF--S--------IRDYF-TF---ASTFENGNVQLWD
   WD 5  197-236    -DRCERM---FTAHNGP-VFCCDW--H--------P-EDRGWL---ATGGRDKMVKVWD
   WD 6  237-282    MTTHRAKEIHCVQTIAS-VARVKW--R--------P-ECR-HHLATCSMMVDHNIYVWD
   WD 7  291-327    -----AM---FEEHRDV-TTGIAWRHP--------H-DPS-FL---LSGSKDSTLCQHL
   WD 8  334-373    -PVERAN---PEGLCYGLFGDLAF--A--------V-KES-LV---AAESGRKPYAGDR

   WD40 Template    TGECLRT---LSGHTSG-VTSVSF--S--------P-DGK-RL---VSGSEDGTIKVWD