Input parameters:

  Query = ENSMUSP00000026990 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000026990, Len=351):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPAAVLGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTAS 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160 
WD40-rpts      __)(____________________WD 2___________________)   (________________WD 3________

Query      161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA 240 
WD40-rpts      ________)  (_________________WD 4________________)   (_________________WD 5_____

Query      241 TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRP 320 
WD40-rpts      ___________)   (_________________WD 6________________)   (________________WD 7__

Query      321 LLAFACDDKDGKYDSSREAGTVKLFGLPNDS 351 
WD40-rpts      ______________)                

7 WD40-repeats found in QUERY=ENSMUSP00000026990 (Len=351):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-83       9.27  497.59  1.2e-05       40.0%     55.49
  WD 2:  Seg  7    84-128      7.62  429.31  0.00010       27.5%     54.69
  WD 3:  Seg 11   132-169      8.12  450.04  5.4e-05       22.5%     55.07
  WD 4:  Seg 15   172-210      7.91  441.22  7.0e-05       12.5%     53.03
  WD 5:  Seg 19   214-252      9.82  520.43  6.0e-06       27.5%     56.26
  WD 6:  Seg 23   256-294      9.65  513.39  7.5e-06       40.0%     56.07
  WD 7:  Seg 27   298-335      6.97  402.46  0.00023       20.0%     56.55

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-83     -HS----KTREFPAHSAKVHSVAWSCDG-RRLASGSFDKTASVFL
   WD 2   84-128    LEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD
   WD 3  132-169    -TK----CIATVNTKGENI-NICWSPDG-QTIAVGNKDDVVTFID
   WD 4  172-210    -TH----RSKAEEQFKFEVNEISWNNDN-NMFFLTNGNGCINILS
   WD 5  214-252    -LK----PVQSINAHPSNCICIKFDPMG-KYFATGSADALVSLWD
   WD 6  256-294    -LV----CVRCFSRLDWPVRTLSFSHDG-KMLASASEDHFIDIAE
   WD 7  298-335    -GD----KLWEVQCE-SPTFTVAWHPKR-PLLAFACDDKDGKYDS

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD