Input parameters:

  Query = ENSMUSP00000027173 (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027173, Len=423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQLQARFYSENKKYAVDDVPFSIPAAAEVADLSNIINKLLETKNELHKHVEFDFLIKGQFLRVPLVKHMELENISSEEV 80  
WD40-rpts                    (_________________________________WD 1____________________________

Query       81 VELEYVEKYTAPQPEQCMFHDDWISSIEGAEEWILSGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLT 160 
WD40-rpts      ____)     (________________WD 2_______________)  (__________________WD 3________

Query      161 ASMDQTVLLWEWNVEKNKVKALHCCRGHAGSVDAIAVDSSGAKFCSGSWDKMLKIWSTVPTDEEDEMEEATNRPRKKQKT 240 
WD40-rpts      __________)       (_________________WD 4________________)                       

Query      241 EQLGLTRTPLVTLSGHTEAISSVLWSDAEEICSASWDHTIRVWDVESGGLKSTLTGNKVFNCISYSPLCKRLASGSTDRH 320 
WD40-rpts            (________________WD 5________________)   (________________WD 6____________

Query      321 IRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLL 400 
WD40-rpts      ____)      (_________________WD 7_________________)(__________________WD 8______

Query      401 LSGGADNKLYSYSYSPTTSHVGA 423 
WD40-rpts      ____________)          

8 WD40-repeats found in QUERY=ENSMUSP00000027173 (Len=423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-85       2.80  230.34  0.04788       12.5%     20.12
  WD 2:  Seg  6    91-127      7.05  405.88  0.00021       20.0%     40.48
  WD 3:  Seg  9   130-171      8.30  457.52  4.2e-05       30.0%     56.27
  WD 4:  Seg 13   179-217      9.26  497.10  1.2e-05       27.5%     53.63
  WD 5:  Seg 17   247-284      6.90  399.55  0.00026       47.5%     53.14
  WD 6:  Seg 21   288-325      8.41  462.11  3.7e-05       42.5%     52.63
  WD 7:  Seg 25   332-371      8.54  467.25  3.1e-05       42.5%     52.60
  WD 8:  Seg 29   372-413      6.63  388.53  0.00036       30.0%     49.68

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-85     YAVD---DVPFSIPAAAEVADLSNIINKLLETKNELHKHVEFDFLI-KGQ---FLRVPLVKHMELENISSEEVVELEY
   WD 2   91-127    -APQ---PEQCMFHDDWI---------------------SSIEGAE-EW-----I----------LSGSYDKTSRIWS
   WD 3  130-171    -GKS---IMTIVGHTDVV---------------------KDVAWVK-KDSLSCLL----------LTASMDQTVLLWE
   WD 4  179-217    -VKA---LHCCRGHAGSV---------------------DAIAVDS-SGA---KF----------CSGSWDKMLKIWS
   WD 5  247-284    -RTP---LVTLSGHTEAI---------------------SSVLWS--DAE---EI----------CSASWDHTIRVWD
   WD 6  288-325    -GGL---KSTLTGNKV-F---------------------NCISYSP-LCK---RL----------ASGSTDRHIRLWD
   WD 7  332-371    -SLV---SLSLTSHTGWV---------------------TSVKWSPTHEQ---QL----------ISGSLDNIVKLWD
   WD 8  372-413    TRSCKAPLYDLAAHEDKV---------------------LSVDWTD-TGL---LL----------SGGA-DNKLYSYS

   WD40 Template    TGEC---LRTLSGHTSGV---------------------TSVSFSP-DGK---RL----------VSGSEDGTIKVWD