Input parameters:

  Query = ENSMUSP00000027512 (Len=607)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027512, Len=607):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEKHDMPNRHEISPGHDGAWNDS 80  
WD40-rpts                                                                                      

Query       81 QLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQ 160 
WD40-rpts                                                                                      

Query      161 TLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI 240 
WD40-rpts                                                                         (____________

Query      241 EVIVDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDIMDTHPASGKDVRVPTTASYVFDA 320 
WD40-rpts      WD 1___________)                                                       (________

Query      321 HDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRL 400 
WD40-rpts      _________WD 2________________)     (_________________WD 3________________)   (__

Query      401 RHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES 480 
WD40-rpts      _______________WD 4________________)   (_______________WD 5_______________)  (__

Query      481 VVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYV 560 
WD40-rpts      _______________WD 6________________)   (___________________WD 7_________________

Query      561 WSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLWAQP 607 
WD40-rpts      _)   (_________________WD 8_________________)  

8 WD40-repeats found in QUERY=ENSMUSP00000027512 (Len=607):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   228-256      3.00  238.46  0.03742       15.0%      9.12
  WD 2:  Seg  5   312-350      7.73  433.88  8.8e-05       27.5%     48.33
  WD 3:  Seg  9   356-394      9.28  497.85  1.2e-05       32.5%     47.10
  WD 4:  Seg 13   398-436     10.58  551.63  2.3e-06       45.0%     53.67
  WD 5:  Seg 17   440-475      6.70  391.43  0.00033       22.5%     46.21
  WD 6:  Seg 21   478-516      7.47  423.40  0.00012       25.0%     52.02
  WD 7:  Seg 25   520-562      8.21  453.78  4.8e-05       37.5%     53.49
  WD 8:  Seg 29   566-605      8.27  456.37  4.4e-05       27.5%     49.93

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  228-256    AKE----------------PLPVEQDDDIEVIVDETSDHTEETSP
   WD 2  312-350    -TTASYVFD-AHD----GEVNAVQFSPGSRLLATGGMDRRVKLWE
   WD 3  356-394    -CEFKGSLS-GSN----AGITSIEFDSAGAYLLAASNDFASRIWT
   WD 4  398-436    -YRLRHTLT-GHS----GKVLSAKFLLDNARIVSGSHDRTLKLWD
   WD 5  440-475    -KVCIKTVF-AGS----S---CNDIVCTEQCVMSGHFDKKIRFWD
   WD 6  478-516    -SESVVREM-ELL----GKITALDLNPERTELLSCSRDDLLKVID
   WD 7  520-562    -NAVKQTFS-APGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWS
   WD 8  566-605    -GKVEKVLSKQHS----SSINAVAWAPSGLHVVSVDKGSRAVLWA

   WD40 Template    TGECLRTLS-GHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD