Input parameters:

  Query = ENSMUSP00000027805 (Len=411)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027805, Len=411):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLFFLKPQVKQQHLILALERNGTIKIIQGKEDDIFLTVIWELPDAMPYLQYGSHIVHLKMSTKERTMAIPFPDVELIVQ 80  
WD40-rpts                                               (___________________WD 1_______________

Query       81 KTSQQTNYSPIVDVDVNCIDVFQTEGYNLIACGTTNGMIILWNFIAASVKEIYRPEDCFSTDPELDPKRFRINDIMFLFR 160 
WD40-rpts      ___)_________________WD 2_________________)(_______________WD 3_______________)(

Query      161 SPECVRRSSQDSICSSTQCDSSKGPQSSKGSKQSIHDADVKGEHTDMVGEQQSASRKQPVPISFVEPQPPLLVSAHEDGH 240 
WD40-rpts      _________________WD 4_________________)          (_______________WD 5___________

Query      241 LRLWTLEGKLIKDMLPFTKHSAISLTSLYTDSCCRVLLAGNVEGHVILCSISSFMDPPHDEKKFKQLLSWRAHSLEIIQV 320 
WD40-rpts      ____)      (_________________WD 6________________)             (________________

Query      321 IYVEEKQLVLTASIDGSVRIWNSTSGHYCGYFGQRRMFDLSQTSDFILPCDVNEYPIEIKEESKFTEKTQKYEYPLIFDR 400 
WD40-rpts      _WD 7________________)(_________________WD 8_________________)                  

Query      401 ERFADMLWKVS 411 
WD40-rpts                 

8 WD40-repeats found in QUERY=ENSMUSP00000027805 (Len=411):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    42-84       5.51  342.47  0.00151       10.0%     19.73
  WD 2:  Seg  6    83-123      4.14  285.84  0.00872       17.5%     34.45
  WD 3:  Seg  9   124-159      3.45  257.21  0.02108       12.5%      0.01
  WD 4:  Seg 11   160-199      3.97  278.83  0.01083       15.0%     27.98
  WD 5:  Seg 14   210-245      7.94  442.55  6.8e-05       22.5%     45.17
  WD 6:  Seg 17   252-290      6.75  393.52  0.00031       15.0%     47.50
  WD 7:  Seg 21   304-342      8.39  461.05  3.8e-05       17.5%     54.53
  WD 8:  Seg 25   343-382      4.69  308.26  0.00436        7.5%     21.46

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-84     ELPDAMPYLQYGSHIVHLK-MSTKE-RTMAIPFPDVELIVQKTSQ
   WD 2   83-123    -SQQTNYSPIVDVDVNCIDVFQTEGYNLIACGTTNG---MIILWN
   WD 3  124-159    ----FIAASVKEIYRPEDC-FSTDP-ELDPKRFRIN---DIMFLF
   WD 4  160-199    RSPECVRRSSQDSICSSTQ-CDSSK-GPQSSKGSKQ---SIHDAD
   WD 5  210-245    ----EQQSASRKQPVPISF-VEPQP-PLLVSAHEDG---HLRLWT
   WD 6  252-290    -KDMLPFTKHSAISLTSLY-TDSCC-RVLLAGNVEG---HVILCS
   WD 7  304-342    -FKQLLSWRAHSLEIIQVI-YVEEK-QLVLTASIDG---SVRIWN
   WD 8  343-382    STSGHYCGYFGQRRMFDLS-QTSDF-ILPCDVNEYP---IEIKEE

   WD40 Template    TGECLRTLSGHTSGVTSVS-FSPDG-KRLVSGSEDG---TIKVWD