Input parameters:

  Query = ENSMUSP00000027807 (Len=352)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000027807, Len=352):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLFFLKPQVKQQHLILALERNGTIKIIQSPIVDVDVNCIDVFQTEGYNLIACGTTNGMIILWNFIAASVKEIYRPEDCF 80  
WD40-rpts                           (___________________WD 1__________________)                

Query       81 STDPELDPKRFRINDIMFLFRSPECVRRSSQDSICSSTQCDSSKGPQSSKGSKQSIHDADVKGEHTDMVGEQQSASRKQP 160 
WD40-rpts                            (___________________WD 2__________________)_______________

Query      161 VPISFVEPQPPLLVSAHEDGHLRLWTLEGKLIKDMLPFTKHSAISLTSLYTDSCCRVLLAGNVEGHVILCSISSFMDPPH 240 
WD40-rpts      ___WD 3__________________)      (_________________WD 4________________)         

Query      241 DEKKFKQLLSWRAHSLEIIQVIYVEEKQLVLTASIDGSVRIWNSTSGHYCGYFGQRRMFDLSQTSDFILPCDVNEYPIEI 320 
WD40-rpts          (_________________WD 5________________)                                     

Query      321 KEESKFTEKTQKYEYPLIFDRERFADMLWKVS 352 
WD40-rpts                                      

5 WD40-repeats found in QUERY=ENSMUSP00000027807 (Len=352):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    22-64       4.63  306.07  0.00466       20.0%     40.38
  WD 2:  Seg  9   103-145      2.93  235.56  0.04087       25.0%     15.62
  WD 3:  Seg 12   145-186      8.07  448.03  5.7e-05       22.5%     40.92
  WD 4:  Seg 15   193-231      6.88  398.90  0.00026       15.0%     48.03
  WD 5:  Seg 19   245-283      8.44  463.38  3.5e-05       17.5%     53.11

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-64     NGTIKI--IQSPIVDVDVNCIDVFQTEGYNLIACGTT----NGMIILWN
   WD 2  103-145    -PEC-V--RRSSQDSICSSTQC-DSSKG-PQSSKGSKQSIHDADVKGEH
   WD 3  145-186    HTDM-VGEQQSASRKQPVPISF-VEPQP-PLLVSAHE----DGHLRLWT
   WD 4  193-231    -KDM-L--PFTKHSAISLTSLY-TDSCC-RVLLAGNV----EGHVILCS
   WD 5  245-283    -FKQ-L--LSWRAHSLEIIQVI-YVEEK-QLVLTASI----DGSVRIWN

   WD40 Template    TGEC-L--RTLSGHTSGVTSVS-FSPDG-KRLVSGSE----DGTIKVWD