Input parameters:

  Query = ENSMUSP00000028220 (Len=454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000028220, Len=454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTC 80  
WD40-rpts                                                                                      

Query       81 CLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYKDGL 160 
WD40-rpts                                                          (__________________WD 1_____

Query      161 LCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYSDELDI 240 
WD40-rpts      _____________)   (_______________WD 2______________)   (_________________WD 3___

Query      241 LVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSV 320 
WD40-rpts      _____________)   (_____________________WD 4_____________________)      (________

Query      321 SEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESLISR 400 
WD40-rpts      _________WD 5_________________)(_________________WD 6_________________)         

Query      401 WPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHC 454 
WD40-rpts               (_________________WD 7_________________)     

7 WD40-repeats found in QUERY=ENSMUSP00000028220 (Len=454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   133-174      6.73  392.66  0.00032       27.5%     53.36
  WD 2:  Seg  9   178-212      7.57  427.48  0.00011       30.0%     49.08
  WD 3:  Seg 13   216-254     10.16  534.38  3.9e-06       42.5%     50.65
  WD 4:  Seg 17   258-305      8.48  464.78  3.4e-05       37.5%     52.22
  WD 5:  Seg 21   312-351      5.83  355.30  0.00101       30.0%     49.64
  WD 6:  Seg 25   352-391      6.50  383.11  0.00043       10.0%     51.61
  WD 7:  Seg 29   410-449      5.87  357.26  0.00095       17.5%     42.17

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  133-174    LEDHEAFETSSLIGHSARV--YALYYKD---------G---LLCTGSDDLSAKLWD
   WD 2  178-212    -GQ----CVYGIQTH------TCAAVKF---------D-EQKLVTGSFDNTVACWE
   WD 3  216-254    -GA----RTQHFRGHTGAV--FSVDYSD---------E-LDILVSGSADFAVKVWA
   WD 4  258-305    -GT----CLNTLTGHTEWV--TKVVLQKCKVKSLLHSP-GDYILLSADKYEIKIWP
   WD 5  312-351    -CK----CLKTLSVSEDRSICLQPRLHF---------D-GKYIVCSSAL-GLYQWD
   WD 6  352-391    FAS----YDILRVIKTPEV--ANLALLG---------F-GDVFALLFDNHYLYIMD
   WD 7  410-449    -KR----GSSFLAGEASWL--NGLDGHN---------DTGLVFATSMPDHSIHLVL

   WD40 Template    TGE----CLRTLSGHTSGV--TSVSFSP---------D-GKRLVSGSEDGTIKVWD