Input parameters:

  Query = ENSMUSP00000028351 (Len=477)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000028351, Len=477):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGSHAGTLRVLQAVDTELTADSVEWCPVEGYQHLLACGTYQLRAPRDQPALDGSEPQVRLGRLYLFSFSEHNTAKPLLE 80  
WD40-rpts                                  (_________________WD 1_________________)           (

Query       81 VQRRDSSAVLDMKWCHIPVSGHVLLGLANASGSIGLLRLMECENNSYTLQPISSLALDENCLSLSMDWSTGKSVRAREQP 160 
WD40-rpts      _________________WD 2________________)                   (_________________WD 3_

Query      161 LKIISSDSKGQLHLLMVNEGTAELQLVASWPAHHFEAWIAAFNYWQTELVYSGGDDCLLRGWDTRMLGTPVFTSKRHCMG 240 
WD40-rpts      _______________)(_____________________WD 4____________________)    (____________

Query      241 VCSIQSSPHQEHILATGSYDEHVLLWDTRNIRQPLADVPVQGGVWRLKWHPVHHHLLLAACMHNGFKILNCQKAIEEKQD 320 
WD40-rpts      _____WD 5_________________)   (_________________WD 6_________________)          

Query      321 ITVLTSHEMPNSLVYGADWSWLFHSMKPTPTWFFDQNDMGVKAADHSSLKVTEEPPIHSQEQTMDRQVEGPANAHTRAEL 400 
WD40-rpts      (____________________WD 7___________________)            (_________________WD 8_

Query      401 KASLLPLTEDMKNSKDCSSSSVKTRDLSHCSGGQSFDNSLLATCSFYDHVLHLWKWETNQARTLCSGTGCDLGSADH 477 
WD40-rpts      ________________)                                                            

8 WD40-repeats found in QUERY=ENSMUSP00000028351 (Len=477):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    29-68       4.57  303.26  0.00509       10.0%     -4.19
  WD 2:  Seg  5    80-118      4.23  289.35  0.00782       12.5%     39.17
  WD 3:  Seg 10   138-176      5.46  340.19  0.00162       20.0%     33.94
  WD 4:  Seg 13   177-223      6.41  379.51  0.00048       20.0%     52.40
  WD 5:  Seg 17   228-267      7.73  434.14  8.8e-05       35.0%     49.47
  WD 6:  Seg 21   271-310      5.69  349.80  0.00120       12.5%     49.65
  WD 7:  Seg 25   321-365      2.99  238.17  0.03775       17.5%     28.58
  WD 8:  Seg 30   378-417      5.08  324.43  0.00264       12.5%     14.00

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-68     VEG------YQHLLACGTYQ-LRAPRDQP-ALDG-SEPQV------RLGRLYLFS
   WD 2   80-118    -EV------QRRDSSAVLDM-KWCHIPVS-GHVL-LGLAN------ASGSIGLLR
   WD 3  138-176    -DE------NCLSLSMDWST-GKSVRARE-QPLK-IISSD------SKGQLHLLM
   WD 4  177-223    VNEGTAELQLVASWPAHHFE-AWIAAFNYWQTEL-VYSGG------DDCLLRGWD
   WD 5  228-267    -GT------PVFTSKRHCMG-VCSIQSSP-HQEHILATGS------YDEHVLLWD
   WD 6  271-310    -IR------QPLADVPVQGG-VWRLKWHPVHHHL-LLAAC------MHNGFKILN
   WD 7  321-365    -IT------VLTSHEMPNSL-VYGADWSW-LFHS-MKPTPTWFFDQNDMGVKAAD
   WD 8  378-417    -HS------QEQTMDRQVEGPANAHTRAE-LKAS-LLPLT------EDMKNSKDC

   WD40 Template    TGE------CLRTLSGHTSG-VTSVSFSP-DGKR-LVSGS------EDGTIKVWD