Input parameters:

  Query = ENSMUSP00000028368 (Len=474)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000028368, Len=474):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRLIHTLADHGDDVSCCAFSAALLATCSLDKTIRLYSLSDFAELPYSPLKFHTYAVHCCCFSPSGHVLASCSTDGTTVL 80  
WD40-rpts      (________________WD 1________________)(___________________WD 2__________________

Query       81 WSSHSGHTLTVLEQPGGSPVRVCCFSPDSAYLASGAADGSIALWNAQTYKLYRCGSVKDSSLVACAFSPDGGLFVTGSSG 160 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      161 GDLTVWDDRMRCLHSEKAHDLGITCCSFSSQPLSGGEGLQSYQLASCGQDCEIKLWAVTITRVLGFELKYKSTLSGHCAP 240 
WD40-rpts      ______)  (_____________________WD 5_____________________)          (____________

Query      241 VLACAFSHDGKMLASGSVDKSVIIHGIGPQSVLHTLTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETPCQGSMN 320 
WD40-rpts      _____WD 6________________)   (_________________WD 7________________)(___________

Query      321 DPLKHFTEEWSEEDVSVWLRAQGLEDLVGIFRANNIDGKELLHLTKESLAGDLKIESLGLRSKVLRSIEELRAKMDSLSS 400 
WD40-rpts      __WD 8____________)                                                             

Query      401 GIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRWLETHEK 474 
WD40-rpts                                                                                

8 WD40-repeats found in QUERY=ENSMUSP00000028368 (Len=474):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.17  452.24  5.0e-05       27.5%     51.10
  WD 2:  Seg  5    39-82       9.00  486.55  1.7e-05       37.5%     47.08
  WD 3:  Seg  8    86-125      8.47  464.54  3.4e-05       40.0%     58.17
  WD 4:  Seg 12   129-167      9.76  517.86  6.5e-06       37.5%     54.94
  WD 5:  Seg 16   170-217      7.68  432.05  9.4e-05       35.0%     56.28
  WD 6:  Seg 20   228-266      9.47  506.01  9.4e-06       40.0%     47.58
  WD 7:  Seg 23   270-308     10.09  531.60  4.3e-06       37.5%     53.92
  WD 8:  Seg 27   309-339      2.79  230.09  0.04825       10.0%     28.26

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MVR----LIHTLADHG-DDVSCCAFS-----------AALLATCSLDKTIRLYS
   WD 2   39-82     LSDFAELPYSPLKFHT-YAVHCCCFSPS---------GHVLASCSTDGTTVLWS
   WD 3   86-125    -GH----TLTVLEQPGGSPVRVCCFSPD---------SAYLASGAADGSIALWN
   WD 4  129-167    -YK----LYRCGSVKD-SSLVACAFSPD---------GGLFVTGSSGGDLTVWD
   WD 5  170-217    -MR----CLHSEKAHD-LGITCCSFSSQPLSGGEGLQSYQLASCGQDCEIKLWA
   WD 6  228-266    -LK----YKSTLSGHC-APVLACAFSHD---------GKMLASGSVDKSVIIHG
   WD 7  270-308    -QS----VLHTLTQHT-RYVTTCAFAPN---------TLLLATGSMDKTVNIWQ
   WD 8  309-339    -------------FDL-ETPCQGSMNDP---------LKHFTEEWSEEDVSVWL

   WD40 Template    TGE----CLRTLSGHT-SGVTSVSFSPD---------GKRLVSGSEDGTIKVWD