Input parameters:

  Query = ENSMUSP00000028676 (Len=524)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000028676, Len=524):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKALSSKADSLLLKSSVDAYTESTRLGPKRTSDSATLSVDAESSDEDSAPGLDDFSGLSPYERKRLRNIRENANFFASLQ 80  
WD40-rpts                                                                                      

Query       81 LAESAARLRGMIKKRESPESKRKRPKKKENEIGCRRSMRLLKVDPLGVSLPASPTQPTLVEEEENPLLPPGPLEMIPENQ 160 
WD40-rpts                                                                                      

Query      161 DDSSELLKASLKTWAEMSQTSNEKTKKGLSSIKSYKANLSGMVISEATVRKVTKGAISSVALHPSEVRTLVAAGAKSGQI 240 
WD40-rpts                                                   (_________________WD 1_____________

Query      241 GLWDLTQQSEDAMYVFYAHSRYVSCLSFSPTNPAHLLSLSYDGTLRCGDFSSAVFEEVYRNEGNSPSSFDFLNDSSSLLV 320 
WD40-rpts      ___)     (_________________WD 2_________________)   (_________________WD 3______

Query      321 GHWDGHLSLVDRRTPGTSYEKFFNSSLEKIRTVHVHPLSRQYFVTAGLRDVHVYDARFLKSRGSQPLISLTEHSKSIASA 400 
WD40-rpts      __________)     (_________________WD 4________________)        (________________

Query      401 YFSPVTGNRVVTTCADCKLRVFDSSSISSQLPLLSTIRHNTVTGRWLTRFQAVWDPKQEDCFIVGSMDHPRRVEVFHESG 480 
WD40-rpts      _WD 5_________________)              (_________________WD 6_________________)   

Query      481 KNVHSLWGECLVSVCSLSAVHPTRYILAGGNSSGKLHVFMHQET 524 
WD40-rpts      (_________________WD 7_________________)    

7 WD40-repeats found in QUERY=ENSMUSP00000028676 (Len=524):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   206-244      6.63  388.62  0.00036       22.5%     46.23
  WD 2:  Seg  7   250-289      8.06  447.68  5.8e-05       32.5%     53.26
  WD 3:  Seg 11   293-331      8.39  461.18  3.8e-05       20.0%     55.57
  WD 4:  Seg 15   337-375      7.43  421.45  0.00013       10.0%     47.51
  WD 5:  Seg 18   384-423      8.05  446.99  5.9e-05       32.5%     48.92
  WD 6:  Seg 23   438-477      4.07  282.87  0.00956       15.0%     28.66
  WD 7:  Seg 26   481-520      6.27  373.82  0.00057       20.0%     50.42

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  206-244    EAT---VRKVTKGAISSVA-LHP---SEVRTLVAAGAKSGQIGLWD
   WD 2  250-289    -EDAMYVFYAHSRYVSCLS-FSP--TNPAH--LLSLSYDGTLRCGD
   WD 3  293-331    -AVFEEVYRNEGNSPSSFD-FLN---DSSS--LLVGHWDGHLSLVD
   WD 4  337-375    -TSYEKFFNSSLEKIRTVH-VHP---LSRQ--YFVTAGLRDVHVYD
   WD 5  384-423    -SQPLISLTEHSKSIASAY-FSP--VTGNR--VVTTCADCKLRVFD
   WD 6  438-477    RHN---TVTGRWLTRFQAV-WDPKQEDCFI--VGSMDHPRRVEVFH
   WD 7  481-520    -KNVHSLWGECLVSVCSLSAVHP---TRYI--LAGGNSSGKLHVFM

   WD40 Template    TGECLRTLSGHTSGVTSVS-FSP---DGKR--LVSGSEDGTIKVWD