Input parameters:

  Query = ENSMUSP00000029000 (Len=431)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029000, Len=431):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIGRSDTVAPGTG 80  
WD40-rpts                                                                                      

Query       81 IDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNM 160 
WD40-rpts                   (___________________WD 1__________________)                        

Query      161 ENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT 240 
WD40-rpts        (_________________WD 2________________)     (_________________WD 3____________

Query      241 LRLYDINTFQCFVSCNPQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKY 320 
WD40-rpts      ____)(____________________WD 4___________________)   (__________________WD 5____

Query      321 ILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSRTAERRNLLSLGHNNIV 400 
WD40-rpts      _____________)   (____________________WD 6___________________)   (______________

Query      401 RCIVHSPTNPGFMTCSDDFRARFWYRRSTTD 431 
WD40-rpts      ___WD 7_________________)      

7 WD40-repeats found in QUERY=ENSMUSP00000029000 (Len=431):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    94-136      8.80  478.17  2.2e-05       25.0%     53.10
  WD 2:  Seg  9   163-201      9.81  520.06  6.1e-06       40.0%     55.98
  WD 3:  Seg 13   207-245      8.04  446.70  5.9e-05       20.0%     53.47
  WD 4:  Seg 17   246-290      9.25  496.91  1.2e-05       35.0%     45.40
  WD 5:  Seg 21   294-334      8.29  456.93  4.3e-05       30.0%     55.41
  WD 6:  Seg 25   338-382      6.48  382.45  0.00044       17.5%     52.42
  WD 7:  Seg 29   386-425      7.91  441.36  7.0e-05       27.5%     50.62

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   94-136    PEA-----SEYETCYVT-SHKGP------CRVATYSRDGQLIATGSADASIKILD
   WD 2  163-201    -HP-----V---IRTLY-DHVDE------VTCLAFHPTEQILASGSRDYTLKLFD
   WD 3  207-245    -AK-----R---AFKYI-QEAEM------LRSISFHPSGDFILVGTQHPTLRLYD
   WD 4  246-290    INTFQCFVS---CNPQD-QHTDA------ICSVNYNPSANMYVTGSKDGCIKLWD
   WD 5  294-334    -NR-----C---ITTFE-KAHDG----AEVCSAIFSKNSKYILSSGKDSVAKLWE
   WD 6  338-382    -GR-----T---LVRYT-GAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWD
   WD 7  386-425    -AE-----R---RNLLSLGHNNI------VRCIVHSPTNPGFMTCSDDFRARFWY

   WD40 Template    TGE-----C---LRTLS-GHTSG------VTSVSFSPDGKRLVSGSEDGTIKVWD