Input parameters:

  Query = ENSMUSP00000029013 (Len=368)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029013, Len=368):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLFGSTSGFGTGGTSMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK 80  
WD40-rpts                           (______________________WD 1_____________________)   (______

Query       81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 
WD40-rpts      ____________WD 2_________________)  (__________________WD 3_________________)   

Query      161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 
WD40-rpts      (________________WD 4________________)   (____________________WD 5______________

Query      241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIAA 320 
WD40-rpts      _____)              (__________________WD 6_________________)   (_______________

Query      321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK 368 
WD40-rpts      __WD 7________________)                         

7 WD40-repeats found in QUERY=ENSMUSP00000029013 (Len=368):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-70       7.17  410.83  0.00018       27.5%     51.55
  WD 2:  Seg  6    74-114      8.28  456.88  4.3e-05       32.5%     50.39
  WD 3:  Seg 10   117-157      7.45  422.44  0.00013       25.0%     54.67
  WD 4:  Seg 14   161-198      3.68  266.61  0.01579        5.0%     37.24
  WD 5:  Seg 18   202-246      4.74  310.31  0.00409       22.5%     34.21
  WD 6:  Seg 23   261-301      7.31  416.58  0.00015       22.5%     36.19
  WD 7:  Seg 26   305-343      7.28  415.44  0.00016       15.0%     50.01

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-70     TTDNHNPMKDIEV--TSSPDDSIGCLSF--SPP---TLPGNFLIAGSWANDVRCWE
   WD 2   74-114    -SGQ------TIPKAQQMHTGPVLDVCW--SDD------GSKVFTASCDKTAKMWD
   WD 3  117-157    -SNQ------AIQ--IAQHDAPVKTIHWIKAPN------YSCVMTGSWDKTLKFWD
   WD 4  161-198    -SNP------MMV--LQLPERCYCADVI--YPM------A-VVATAERGLIVYQLE
   WD 5  202-246    -SEF------RRI--ESPLKHQHRCVAI--FKDKQNKPTGFALGSIEGRVAIHYIN
   WD 6  261-301    RSNG------TNT-SAPQDIYAVNGIAF--HPV------HGTLATVGSDGRFSFWD
   WD 7  305-343    -RTK------LKT--SEQLDQPIAACCF--NHN------GNIFAYASSYDWSKGHE

   WD40 Template    TGEC------LRT--LSGHTSGVTSVSF--SPD------GKRLVSGSEDGTIKVWD