WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000029374 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000029374 (Len=2936) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000029374, Len=2936): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASDKPGPGLEPQPVALLAVGAGGGAGGGGAMGEPRGAAGSGPVVLPAGMINPSVPIRNIRMKFAVLIGLIQVGEVSNRD 80
WD40-rpts
Query 81 IVETVLNLLVGGEFDLEMNFIIQDAESITCMTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAV 160
WD40-rpts
Query 161 DDMIADLLVDMLGVLASYSITVKELKLLFSMLRGESGIWPRHAVKLLSVLNQMPQRHGPDTFFNFPGCSAAAIALPPIAK 240
WD40-rpts
Query 241 WPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGVGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISI 320
WD40-rpts
Query 321 VHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFAVHQLGP 400
WD40-rpts
Query 401 GYKSTFKFKSESDIHLAEHHKQVLYDGKLASSIAFSYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIH 480
WD40-rpts
Query 481 SAIHSIGGIQVLFPLFAQLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRVHITRAV 560
WD40-rpts
Query 561 LEQFLSFAKYLDGLSHGAPLLKQLCDHILFNPAIWIHTPAKVQLSLYTYLSAEFIGTATIYTTIRRVGTVLQLMHTLKYY 640
WD40-rpts
Query 641 YWVINPADSSGIAPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLLVALM 720
WD40-rpts
Query 721 SEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMHTHSLFTLLGERLMLHTNTVTVTTY 800
WD40-rpts
Query 801 NTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILKVVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCS 880
WD40-rpts
Query 881 VWQDWMFSLGYINPKSSEEQKITEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEEYQRQEE 960
WD40-rpts
Query 961 ENIKKGKKGNVSTISGLSSQTAGAKGGMEIREIEDLSQSQSPESETDYPVSTDTRDLLMSTKVSDDILGSSDRPGSGVHV 1040
WD40-rpts
Query 1041 EVHDLLVDIKAEKVEATEVKLDDMDLSPETLVGGENGALVEVESLLDNVYSAAVEKLQNNVHGSVGIIKKNEEKDNGPLI 1120
WD40-rpts
Query 1121 TLADEKEELPNSSTPFLFDKIPRQEEKLLPELSSNHIIPNIQDTQVHLGVSDDLGLLAHMTASVELTCTSSIMEEKDFRI 1200
WD40-rpts
Query 1201 HTTSDGVSSVSERELASSTKGLDYAEMTATTLETESSNSKAVPNVDAGSIISDTERSDDGKESGKEIRKIQTTATTQAVQ 1280
WD40-rpts
Query 1281 GRSSTQQDRDLRVDLGFRGMPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALETDVHVWRSHSTKSVMDFV 1360
WD40-rpts
Query 1361 NSNENIIFVHNTIHLISQMVDNIIIACGGILPLLSAATSPTGSKTELENIEVTQGMSAETAVTFLSRLMAMVDVLVFASS 1440
WD40-rpts
Query 1441 LNFSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLECRQRQRDRGSKSSHGSSKPQEAPHSVTAASASKTPLENVPGNLSP 1520
WD40-rpts
Query 1521 IKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETARTGSQPGRNIRQEINSPTST 1600
WD40-rpts
Query 1601 VVVIPSIPHPSLNHGLLAKLMPEQSFAHSFYKETPATFPDTVKEKETPTPGEDIQLESSVPHTDSGMGEEQVASILDGAE 1680
WD40-rpts
Query 1681 LEPAAGPDAMSELLSTLSSEVKKSQESLTEHPSEMLKPAPSISSISQTKGINVKEILKSLVAAPVEIAECGPEPIPYPDP 1760
WD40-rpts
Query 1761 ALKREAHAILPMQFHSFDRSVVVPVKKPPPGSLAVTTVGATAAGSGLPTGSTSSIFAAPGATPKSMINTTGAVDSGSSSS 1840
WD40-rpts
Query 1841 SSSSSFVNGATSKNLPAVQTVAPMPEDSAENMSITAKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQELLIEGLVCM 1920
WD40-rpts
Query 1921 KSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQY 2000
WD40-rpts
Query 2001 AADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTH 2080
WD40-rpts
Query 2081 AEALLKSAVEYGTEEDVVKSKKAFRSQAIVNQNSETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAPVVVAKGT 2160
WD40-rpts
Query 2161 LSITTTEIYFEVDEDDAAFKKIDTKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKV 2240
WD40-rpts
Query 2241 VYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESE 2320
WD40-rpts
Query 2321 ELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQSPPFHYNTHYSTATSALSWLVRIEPFTTFFLNANDGKFDHP 2400
WD40-rpts
Query 2401 DRTFSSIARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFV 2480
WD40-rpts
Query 2481 SCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLC 2560
WD40-rpts
Query 2561 FLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLP 2640
WD40-rpts
Query 2641 IEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSE 2720
WD40-rpts (_________________WD 1_________________) (___________________W
Query 2721 SYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTIT 2800
WD40-rpts D 2__________________) (_____________________WD 3_____________________)
Query 2801 GDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQ 2880
WD40-rpts (_________________WD 4________________)
Query 2881 ACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQNRY 2936
WD40-rpts (_________________WD 5________________)
 5 WD40-repeats found in QUERY=ENSMUSP00000029374 (Len=2936): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 35 2657-2696 3.21 247.39 0.02848 17.5% 36.52 WD 2: Seg 38 2700-2742 5.33 334.84 0.00191 32.5% 54.58 WD 3: Seg 43 2751-2798 4.43 297.70 0.00604 25.0% 53.18 WD 4: Seg 51 2842-2880 5.17 328.16 0.00235 27.5% 58.10 WD 5: Seg 55 2884-2922 4.31 292.61 0.00707 22.5% 56.82Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2657-2696 QIT--------DLVDQSIQINAHCFVVTAD----NRYILICGFWDKSFRVYS WD 2 2700-2742 -GK--------LTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWY WD 3 2751-2798 GDNPNSSDYPAPRAVLTGHDHEVVCVSVCA----ELGLVISGAKEGPCLVHT WD 4 2842-2880 NGK--------LLAQME-INDSTRAILLSS----DGQNLVTGGDNGVVEVWQ WD 5 2884-2922 -FK--------QLYIYPGCDAGIRAMDLSH----DQRTLITGMASGSIVAFN WD40 Template TGE--------CLRTLSGHTSGVTSVSFSP----DGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |