Input parameters:

  Query = ENSMUSP00000029628 (Len=383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029628, Len=383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTSKENLKEKGPQNATDSYPHK 80  
WD40-rpts                           (_______________WD 1_______________)   (___________________

Query       81 QYPANQGQDVEYLVTGTHPYPAGPGVALTADTKIQRMPSESAAQSLAVALPSQTRVDANRTGPAGSEYRHPGASDRSQPT 160 
WD40-rpts      _WD 2____________________)   (_________________WD 3________________)   (________

Query      161 AMNSIMETGNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLS 240 
WD40-rpts      _________WD 4________________)  (_________________WD 5________________)   (_____

Query      241 LTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWDVRTKA 320 
WD40-rpts      ____________WD 6________________)   (_________________WD 7________________)   (_

Query      321 SVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLL 383 
WD40-rpts      ________________WD 8________________)                          

8 WD40-repeats found in QUERY=ENSMUSP00000029628 (Len=383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    22-57       4.58  303.85  0.00500        2.5%     15.06
  WD 2:  Seg  3    61-106      5.36  336.08  0.00184       15.0%      9.94
  WD 3:  Seg  4   110-148      7.31  416.69  0.00015       10.0%     36.64
  WD 4:  Seg  7   152-190      7.20  411.96  0.00017        7.5%     43.77
  WD 5:  Seg 11   193-231     10.29  539.66  3.3e-06       37.5%     55.31
  WD 6:  Seg 15   235-273      9.80  519.57  6.2e-06       37.5%     54.64
  WD 7:  Seg 19   277-315      9.72  516.26  6.8e-06       32.5%     54.69
  WD 8:  Seg 23   319-357     10.14  533.68  4.0e-06       37.5%     53.58

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-57     ---HDMFVADNGKPVPLDEES-------HKRKMAIKLRNEYGPVLH
   WD 2   61-106    SKENLKEKGPQNATDSYPHKQYPANQGQDVEYLVTGTHPYPAGPGV
   WD 3  110-148    ADTKIQRMPSESAAQSLAVAL-------PSQTRVDANRTGPAGSEY
   WD 4  152-190    GASDRSQPTAMNSIMETGNTK-------NSALMAKKAPTMPKPQWH
   WD 5  193-231    WKLYRVISGHLGWVRCIAVEP-------GNQWFVTGSADRTIKIWD
   WD 6  235-273    GKLKLSLTGHISTVRGVIVST-------RSPYLFSCGEDKQVKCWD
   WD 7  277-315    NKVIRHYHGHLSAVYGLDLHP-------TLDVLVTCSRDSTARIWD
   WD 8  319-357    KASVHTLSGHTNAVATVRCQA-------AEPQIITGSHDTTIRLWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-------DGKRLVSGSEDGTIKVWD