Input parameters:

  Query = ENSMUSP00000029727 (Len=629)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000029727, Len=629):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRVCVPSSVLVLSCVCWCWGVLLPVPLPNLPFLACLSMSTLESVTYLPEKGLYCQRLPSSRTHGGTESLKGKNTENMGFY 80  
WD40-rpts                                                                                      

Query       81 GTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSDYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWL 160 
WD40-rpts                                                                                      

Query      161 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN 240 
WD40-rpts                                                                                      

Query      241 LLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGS 320 
WD40-rpts                                                         (________________WD 1________

Query      321 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 400 
WD40-rpts      ________)   (________________WD 2_______________)   (________________WD 3_______

Query      401 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS 480 
WD40-rpts      ________)   (________________WD 4_______________)   (________________WD 5_______

Query      481 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVI 560 
WD40-rpts      ________)   (________________WD 6_______________)   (_________________WD 7______

Query      561 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 629 
WD40-rpts      ___________)   (_____________________WD 8_____________________)      

8 WD40-repeats found in QUERY=ENSMUSP00000029727 (Len=629):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   292-329      6.93  400.88  0.00025       37.5%     47.61
  WD 2:  Seg  7   333-369      9.07  489.31  1.6e-05       50.0%     52.67
  WD 3:  Seg 11   373-409      8.93  483.66  1.9e-05       52.5%     51.75
  WD 4:  Seg 15   413-449      8.96  484.64  1.8e-05       47.5%     51.94
  WD 5:  Seg 19   453-489      8.87  480.88  2.1e-05       52.5%     52.69
  WD 6:  Seg 23   493-529      8.54  467.25  3.1e-05       40.0%     53.60
  WD 7:  Seg 27   533-572      8.17  451.96  5.0e-05       35.0%     48.99
  WD 8:  Seg 31   576-623      5.38  336.73  0.00180       32.5%     55.23

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  292-329    LKSPKVL-----KGHDDHVITC--LQFCGNRIVSGSDDNT----LKVWS
   WD 2  333-369    GKCLRTL-----VGHTGGVWSS-QMRDN--IIISGSTDRT----LKVWN
   WD 3  373-409    GECIHTL-----YGHTSTVRCM-HLHE--KRVVSGSRDAT----LRVWD
   WD 4  413-449    GQCLHVL-----MGHVAAVRCV-QY--DGRRVVSGAYDFM----VKVWD
   WD 5  453-489    ETCLHTL-----QGHTNRVYSL-QF--DGIHVVSGSLDTS----IRVWD
   WD 6  493-529    GNCIHTL-----TGHQSLTSGM-ELKDN--ILVSGNADST----VKIWD
   WD 7  533-572    GQCLQTL-----QGPSKHQSAVTCLQFNKNFVITSSDDGT----VKLWD
   WD 8  576-623    GEFIRNLVTLESGGSGGVVWRI-RASNTKLVCAVGSRNGTEETKLLVLD

   WD40 Template    GECLRTL-----SGHTSGVTSV-SFSPDGKRLVSGSEDGT----IKVWD