Input parameters:

  Query = ENSMUSP00000030021 (Len=543)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000030021, Len=543):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWNGNSKLRPSSPVLKPNQMSWHPQYRSSKFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFL 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VIPLHQTGKLDPHYPKVCGHRGNVLDIKWNPFNDFEIASCSEDATIKIWNIPKQLLTRNLTTYRKELIGHARRVGLVEWH 160 
WD40-rpts      ___)      (_________________WD 2_________________)          (_________________WD

Query      161 PTTANILFSAGYDYKVMVWNLDTKDSVIAGPVKTINCHQDVILSMSFNTNGSLLATTCKDRKIRIVDPRLGIVLQEASYK 240 
WD40-rpts       3_________________)(_____________________WD 4____________________)   (_________

Query      241 GHRANKVLFLGSLKKLLSTGTSRWNNRQMALWDQENLSVPLTEEDLDGSSGVLFPFFDSDTSMLYIVGKGDGNIRYYEVS 320 
WD40-rpts      __________WD 5__________________)(____________________WD 6___________________) (

Query      321 MEKPHLTYLTEYRSYNPQKGIGIMPKRGLDVSSCEIFRFYKLITTKSLIEPVSMIVPRRSESYQEDIYPPTAAAQPSLTA 400 
WD40-rpts      __________________WD 7__________________)                                       

Query      401 HEWLSGMNRGPIMMSLRPGSELLDSQTLPPERPLSNSMVQVSPQPLEPMKQPAEDGDQAPFSLLEEKLAKWTAEHHLGEK 480 
WD40-rpts                                                                                      

Query      481 SCLTNGFDVFECSPPKTENELLQMFYRQQEEIRRLRELLIQREVQTKQLELEIKNLRMALGQL 543 
WD40-rpts                                                                     

7 WD40-repeats found in QUERY=ENSMUSP00000030021 (Len=543):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-84       4.30  292.13  0.00718       10.0%     21.15
  WD 2:  Seg  7    91-130      7.23  413.51  0.00017       30.0%     44.67
  WD 3:  Seg 11   141-180      6.28  374.22  0.00056       27.5%     50.85
  WD 4:  Seg 15   181-227      7.97  443.81  6.5e-05       25.0%     52.13
  WD 5:  Seg 19   231-273      4.95  319.05  0.00312       25.0%     51.51
  WD 6:  Seg 23   274-318      5.56  344.35  0.00142       17.5%     50.66
  WD 7:  Seg 27   320-361      2.89  234.11  0.04271       17.5%     37.95

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-84     YDS-------VPITRSVHDNHFCAVNPHF-I-AVVTECAG----GGAFLVIPL
   WD 2   91-130    -DP-------HYPKVCGHRGNVLDIKWNPFN-DFEIASCS----EDATIKIWN
   WD 3  141-180    -TT-------YRKELIGHARRVGLVEWHP-TTANILFSAG----YDYKVMVWN
   WD 4  181-227    LDTKDSVIAGPVKTINCHQDVILSMSFNT-N-GSLLATTC----KDRKIRIVD
   WD 5  231-273    -GI-------VLQEASYKGHRANKVLFLG-S-LKKLLSTGTSRWNNRQMALWD
   WD 6  274-318    QEN--LSVPLTEEDLDGSSGVLFPFFDSD-T-SMLYIVGK----GDGNIRYYE
   WD 7  320-361    SME-----KPHLTYLTEYRSYNPQKGIGI-M-PKRGLDVS----SCEIFRFYK

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSP-D-GKRLVSGS----EDGTIKVWD