Input parameters:

  Query = ENSMUSP00000030087 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000030087, Len=367):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLLDGQLKPALPQKVFCRLWAVMGKLQSKLRHSTYLYSRPDGIIEERVQTKAPQEYIPVHVDTVSVIATLNSDLCISGG 80  
WD40-rpts                                                         (________________WD 1________

Query       81 KDKTAVAYNWKTGRMVKRFTGHEREITKIACIPKANQFFSASRDKTVLMWDLQGSSHPRQQLSGHAMVVTGLAVSPDSSQ 160 
WD40-rpts      ________)   (_________________WD 2________________)    (_________________WD 3___

Query      161 LCTGSRDNSLLLWDVGTGQCVERASVSRNLVTHLCWVPSEPYIVQTSEDKTIRLWDSRGLQMAHMFPTKQHIQTHCEVSV 240 
WD40-rpts      _____________)   (_________________WD 4________________)   (___________________W

Query      241 DGHTCISCSSGFGGEGCEATLWDLRQTRDRMCEYKGHFQTVASCVFLPKSTALMPMIATSAHDSKVKIWNQDTGACLSTL 320 
WD40-rpts      D 5___________________)    (___________________WD 6__________________)   (______

Query      321 SLDGSGPLTSLAVGDISSLLCASFYRGVHLLRVDHSQGLELQEVAAF 367 
WD40-rpts      ___________WD 7________________)               

7 WD40-repeats found in QUERY=ENSMUSP00000030087 (Len=367):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    52-89       7.33  417.34  0.00015       20.0%     49.92
  WD 2:  Seg 10    93-131      9.81  520.03  6.1e-06       27.5%     55.59
  WD 3:  Seg 14   136-174     10.06  530.17  4.4e-06       37.5%     53.83
  WD 4:  Seg 18   178-216      9.90  523.78  5.4e-06       35.0%     53.27
  WD 5:  Seg 22   220-263      7.43  421.78  0.00013       22.5%     45.70
  WD 6:  Seg 26   268-310      7.93  442.36  6.8e-05       25.0%     45.47
  WD 7:  Seg 30   314-352      5.54  343.46  0.00146       27.5%     53.15

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-89     KAPQEYIPVHVDTV-SVIATLNSDLC----IS-----GGKDKTAVAYN
   WD 2   93-131    GRMVKRFTGHEREITKIACIPKANQF----FS-----ASRDKTVLMWD
   WD 3  136-174    SHPRQQLSGHAMVVTGLAVSPDSSQL----CT-----GSRDNSLLLWD
   WD 4  178-216    GQCVERASVSRNLVTHLCWVPSEPYI----VQ-----TSEDKTIRLWD
   WD 5  220-263    LQMAHMFPTKQHIQTHCEVSVDGHTC----ISCSSGFGGEGCEATLWD
   WD 6  268-310    RDRMCEYKGHFQTVASCVFLPKSTALMPMIAT-----SAHDSKVKIWN
   WD 7  314-352    GACLSTLSLDGSGPLTSLAVGDISSL----LC-----ASFYRGVHLLR

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRL----VS-----GSEDGTIKVWD