Input parameters:

  Query = ENSMUSP00000030095 (Len=780)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000030095, Len=780):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGVRGLPGLPPTQQQLQAQHLSHGHGPPVPLTPHPSGL 160 
WD40-rpts                                                                                      

Query      161 QPPGIPPLGGSASLLALSSALSGQSHLAIKDDKKHHDAERHRDREPGTSNSLLVPDSLRGTDKRRNGPEFSSDIKKRKVD 240 
WD40-rpts                                                                                      

Query      241 DKDNYDSDGDKSDDNLVVDVSNEDPSSPHASPTHSPRENGIDKNRLLKKDASGSPASTASSGSSSSLKSKEVSLHEKANT 320 
WD40-rpts                                                                                      

Query      321 PVLKSSTPTPRSDMPTPGTSATPGLRPGLGKPPAMEPLVNQAAAGLRTPLAVPGPYPAPFGMVPHAGMNGELTSPGAAYA 400 
WD40-rpts                                                                                      

Query      401 GLHSMSPQMSAAAAAAAAAVVAYGRSPMVGFDPPPHMRVPSIPPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPG 480 
WD40-rpts                                                                                 (____

Query      481 IPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 560 
WD40-rpts      ________________WD 1____________________)(_____________________WD 2_____________

Query      561 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 640 
WD40-rpts      _______)     (_________________WD 3________________)   (_________________WD 4___

Query      641 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 720 
WD40-rpts      _____________)(__________________WD 5_________________)(__________________WD 6__

Query      721 KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 780 
WD40-rpts      _______________)(__________________WD 7_________________)   

7 WD40-repeats found in QUERY=ENSMUSP00000030095 (Len=780):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   476-521      5.91  358.99  0.00090       25.0%     50.35
  WD 2:  Seg 11   522-568      7.49  423.89  0.00012       25.0%     48.29
  WD 3:  Seg 14   574-612      8.67  472.63  2.7e-05       30.0%     56.07
  WD 4:  Seg 18   616-654      9.91  524.01  5.4e-06       35.0%     54.30
  WD 5:  Seg 22   655-695      6.95  401.83  0.00024       25.0%     51.13
  WD 6:  Seg 26   696-736      8.34  459.19  4.0e-05       30.0%     54.28
  WD 7:  Seg 30   737-777      7.51  424.96  0.00012       32.5%     53.05

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  476-521    LIG-------PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 2  522-568    ISHPGNKSPVS-------QLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD
   WD 3  574-612    -PR-------I-------KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 4  616-654    -QT-------L-------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 5  655-695    LRE-------G-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 6  696-736    VNK------PD-------KYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 7  737-777    TPY------GA-------SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------C-------LRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD