Input parameters:

  Query = ENSMUSP00000030140 (Len=1333)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000030140, Len=1333):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRNLKLHRTLEFRDIQAPGKPQCFCLRAEQGTVLIGSERGLTEVDPVRREVKTEISLVAEGFLPEDGSGCIVGIQDLLDQ 80  
WD40-rpts                                                                (________________WD 1_

Query       81 ESVCVATASGDVIVCNLSTQQLECVGSVASGISVMSWSPDQELLLLATAQQTLIMMTKDFEVIAEEQIHQDDFGEGKFVT 160 
WD40-rpts      _______________)  (_________________WD 2________________)                       

Query      161 VGWGSKQTQFHGSEGRPTAFPVQLPENALPWDDRRPHITWRGDGQYFAVSVVCRQTEARKIRVWNREFALQSTSESVPGL 240 
WD40-rpts                                                                         (____________

Query      241 GPALAWKPSGSLIASTQDKPNQQDVVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSVLAIWLEDLPKEDSSTLKSYV 320 
WD40-rpts      ______WD 3__________________)      (_________________WD 4________________)      

Query      321 QLWTVGNYHWYLKQSLPFSTTGKNQIVSLLWDPVTPCRLHVLCTGWRYLCCDWHWTTDRSSGNSANDLANVAVIDGNRVL 400 
WD40-rpts                                                                                      

Query      401 VTVFRQTVVPPPMCTYRLLIPHPVNQVIFSAHLGNDLAVLDASNQISVYKCGDKPNMDSTVKLGAVGGNGFKVPLTTPHL 480 
WD40-rpts                                                                                      

Query      481 EKRYSIQFGNNEEEEEEEVNALQLSFLTWVEDDTFLAISYSHSSSQSIIHHLTVTHSEVDEEQGQLDVSSSVTVDGVVIG 560 
WD40-rpts                                                                                      

Query      561 LCCCSKTKSLAVQLADGQVLKYLWESPSLAVEPWKNSEGIPVRFVHPCTQMEVATIGGEECVLGLTDRCRFFINDTEVAS 640 
WD40-rpts                                                                                      

Query      641 NITSFAVCDDFLLVTTHSHTCQVFSLSGASLKMLQAALSGSHEASGEILRKVERGSRIVTVVPQDTKLILQMPRGNLEVV 720 
WD40-rpts                                                                                      

Query      721 HHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDHNPKVFLENVETFVKQIDSVNHINLFFTELREEDVTKTMYPP 800 
WD40-rpts                                                                                      

Query      801 PITKSVQVSTHPDGKKLDLICDAMRAAMEAINPRKFCLSILTSHVKKTTPELEIVLQKVQELQGNLPFDPESVSVEEALK 880 
WD40-rpts                                                                                      

Query      881 YLLLLVDVNELFNHSLGTYDFNLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFT 960 
WD40-rpts                                                                                      

Query      961 ECLNLIKDKNLYKEALKLYRPDSPQYQAVSMAYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQ 1040
WD40-rpts                                                                                      

Query     1041 MSKDKVAGLARTLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVDIIETSVKPSILEAQKN 1120
WD40-rpts                                                                                      

Query     1121 YMDFLDSETATFIRHKNRLQVVRALRRQAPQVHVDHEVAHGPESDLFSETSSIMSGSEMSGRYSHSNSRISARSSKNRRK 1200
WD40-rpts                                                                                      

Query     1201 AERKKHSLKEGSPLEGLALLEALSEVVQSVEKLKDEVRAILKVLFLFEFEEQAKELQRAFESTLQLMERAVPEIWTPAGQ 1280
WD40-rpts                                                                                      

Query     1281 QSSTTPVLGPSSTANSITASYQQQKTCVPALDAGVYMPPKMDPRSQWKLSLLE 1333
WD40-rpts                                                           

4 WD40-repeats found in QUERY=ENSMUSP00000030140 (Len=1333):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    59-96       3.99  279.32  0.01067       10.0%     42.26
  WD 2:  Seg  8    99-137      5.73  351.31  0.00115       22.5%     52.27
  WD 3:  Seg 18   228-269      3.61  263.79  0.01722       10.0%     26.59
  WD 4:  Seg 21   276-314      4.10  284.14  0.00919       15.0%     26.68

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   59-96     AEGFL--PEDGSGCIVGIQDLLDQESVCV---ATASGDVIVCN
   WD 2   99-137    -TQQLECVGSVASGISVMSWSPDQELLLL---ATAQQTLIMMT
   WD 3  228-269    -FALQSTSESVPGLGPALAWKPSGSLIASTQDKPNQQDVVFFE
   WD 4  276-314    -GHFTLPFLKDEVKVNDLLWNADSSVLAI---WLEDLPKEDSS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD