Input parameters:

  Query = ENSMUSP00000030940 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000030940, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320 
WD40-rpts      _____________)   (__________________WD 6_________________)   (_________________W

Query      321 TDDGMAVATGSWDSFLKIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=ENSMUSP00000030940 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    45-83       9.60  511.28  8.0e-06       35.0%     48.92
  WD 2:  Seg  5    87-125      8.78  477.47  2.3e-05       15.0%     56.46
  WD 3:  Seg  9   133-170      7.77  435.54  8.4e-05       32.5%     49.48
  WD 4:  Seg 13   174-212     10.43  545.42  2.8e-06       42.5%     55.69
  WD 5:  Seg 17   216-254     10.47  547.05  2.6e-06       35.0%     54.12
  WD 6:  Seg 21   258-298      8.45  463.84  3.5e-05       42.5%     57.44
  WD 7:  Seg 25   302-340      9.78  518.72  6.3e-06       27.5%     47.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-83     MRTRRTLRGHL--AKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 2   87-125    TNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYN
   WD 3  133-170    VRVSRELAGHT--GYLSCCRFLDDNQ-IVTSSGDTTCALWD
   WD 4  174-212    GQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWD
   WD 5  216-254    GMCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFD
   WD 6  258-298    DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD
   WD 7  302-340    ADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKIWN

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD