Input parameters:

  Query = ENSMUSP00000031003 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031003, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEDTDTRKINHSFLRDHSYVTEADVISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVYSTFQSHEPEF 80  
WD40-rpts              (___________________WD 1___________________)                      (_____

Query       81 DYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMV 160 
WD40-rpts      _______________WD 2___________________)     (_________________WD 3______________

Query      161 EVSPRRTFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVY 240 
WD40-rpts      ___)(_______________WD 4_______________)            (_________________WD 5______

Query      241 SSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQ 320 
WD40-rpts      __________)                   (________________WD 6________________)            

Query      321 VHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRR 400 
WD40-rpts       (____________________WD 7___________________)  (_________________WD 8__________

Query      401 RDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH 447 
WD40-rpts      ______)                                        

8 WD40-repeats found in QUERY=ENSMUSP00000031003 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-52       7.25  414.13  0.00016       15.0%     38.90
  WD 2:  Seg  5    75-119      4.54  302.34  0.00523       17.5%     44.62
  WD 3:  Seg  9   125-164      6.09  366.19  0.00072       12.5%     11.68
  WD 4:  Seg 11   165-200      6.11  366.92  0.00071       25.0%     45.98
  WD 5:  Seg 16   213-251      5.95  360.57  0.00086       20.0%     40.21
  WD 6:  Seg 19   271-308      6.33  376.00  0.00053       30.0%     42.67
  WD 7:  Seg 23   322-366      5.41  338.01  0.00173       10.0%     41.12
  WD 8:  Seg 26   369-407      5.40  337.59  0.00175       12.5%     22.20

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-52     KINHSFLRDHSY-----VTEADVISTVEFNH--TGELLATGDKGGRVVIFQ
   WD 2   75-119    SHE----PEFDY--LKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWK
   WD 3  125-164    KRP----EGYNL-----KDEEGKLKDLSTVT--SLQVPVLKPMDLMVEVSP
   WD 4  165-200    -------RRTFA-----NGHTYHINSISVNS--DCETYMS-ADDLRINLWH
   WD 5  213-251    IKP------ANM-----EDLTEVITASEFHP-HHCNLFVYSSSKGSLRLCD
   WD 6  271-308    -PS----NRSFF-----SEIISSVSDVKFSH--SGRYMLT-RDYLTVKVWD
   WD 7  322-366    HDY----LRSKLCSLYESDCIFDKFECAWNG--SDSVIMTGAYNNFFRMFD
   WD 8  369-407    -TK----RDVTL-----EASRESSKPRAVLK--PRRVCVGGKRRRDDISVD

   WD40 Template    TGE----CLRTL-----SGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD