Input parameters:

  Query = ENSMUSP00000031625 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031625, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWS 80  
WD40-rpts      (_______________WD 1_______________)     (_________________WD 2________________)

Query       81 QKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAG 160 
WD40-rpts           (_________________WD 3________________) (____________________WD 4__________

Query      161 SCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRLAWVSHDSTVSVADASKSVQVS 240 
WD40-rpts      _________)                             (______________WD 5_____________)   (____

Query      241 TLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSIQRNMSAMERFRNMDKRATTEDRNTALE 320 
WD40-rpts      ____________WD 6________________)   (________________WD 7________________)(_____

Query      321 TLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 370 
WD40-rpts      _____________WD 8__________________)              

8 WD40-repeats found in QUERY=ENSMUSP00000031625 (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       7.11  408.20  0.00020        5.0%     38.11
  WD 2:  Seg  4    42-80       8.71  474.44  2.5e-05       22.5%     51.15
  WD 3:  Seg  8    86-124      7.25  414.12  0.00016       20.0%     53.77
  WD 4:  Seg 12   126-170      8.17  452.09  5.0e-05       25.0%     51.96
  WD 5:  Seg 17   200-232      7.84  438.39  7.7e-05       37.5%     48.14
  WD 6:  Seg 20   236-273      6.81  396.00  0.00029       20.0%     54.85
  WD 7:  Seg 24   277-314      5.21  329.71  0.00224       15.0%     28.03
  WD 8:  Seg 27   315-356      6.95  401.95  0.00024       22.5%     47.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     ---------MSLHQFLLEPITCHAW----NRDRTQIALSPNNHEVHIYK
   WD 2   42-80     -WT-----KAHELKEHNGHITGIDW----APKSDRIVTCGADRNAYVWS
   WD 3   86-124    -WK-----PTLVILRINRAATFVKW----SPLENKFAVGSGARLISVCY
   WD 4  126-170    ESENDWWVSKHIKKPIRSTVLSLDW----HPNNVLLAAGSCDFKCRVFS
   WD 5  200-232    ------------GSGTGGWVHGVSF----SASGNRLAWVSHDSTVSVAD
   WD 6  236-273    -SV-----QVSTLRTEFLPLLSVSF----VSENSVVAAGH-DCCPMLFN
   WD 7  277-314    -RG-----CLTFVSKLDVPKQSIQR----NMSAMERFRNM-DKRATTED
   WD 8  315-356    --R-----NTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSF----SPDGKRLVSGSEDGTIKVWD