Input parameters:

  Query = ENSMUSP00000031665 (Len=354)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031665, Len=354):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQVKSCLADENQSEVCDCTYMEVNRNRCVIAVGWDRRINVYFDIPRDFHHFRKPQPHWQDDLNHGHKEDILCVAQCPPF 80  
WD40-rpts      (___________________WD 1__________________)              (________________WD 2__

Query       81 LLATSSYDGEIIVWNVISGHMYCKLNTPSPMDGQDHREGPDRSVSQLAFLKTRLTKLDSASAALISNGPGGSVCFWKLFS 160 
WD40-rpts      ______________)          (_______________________WD 3_______________________)(__

Query      161 GSGLVANFTPSREKAQVSGIVVTSGDTLAYLADQHGFIHVYDIQEYGLQGTELQAPNTVTSWRAHVSMVTSLELIEGGSI 240 
WD40-rpts      __________________WD 4___________________)             (_________________WD 5___

Query      241 VLSSSLDCTVRLWSQDGAYIGTFGQNHPWDVFTPDSWGHPRVPFEILTDPRSMPTHRVLETDVPAGCLEGRQEQDHGTEE 320 
WD40-rpts      _____________)                                                                  

Query      321 KDPCEKVSSPWPWNTATCSTLVSNLRTLSPYFLF 354 
WD40-rpts                                        

5 WD40-repeats found in QUERY=ENSMUSP00000031665 (Len=354):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-43       3.92  276.71  0.01156       15.0%     48.31
  WD 2:  Seg  5    58-95       6.93  400.98  0.00025       27.5%     43.55
  WD 3:  Seg  9   106-157      5.57  344.70  0.00141       17.5%     42.25
  WD 4:  Seg 12   158-202      7.61  429.15  0.00010       17.5%     51.66
  WD 5:  Seg 16   216-254      8.81  478.51  2.2e-05       27.5%     52.77

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-43     MN----Q-----VKSCLADENQSEVCDCTY------MEVNRNRCVIAVGWDRRINVYF
   WD 2   58-95     -H----W-----QDDLN-HGHKEDILCVAQ--------CP-PFLLATSSYDGEIIVWN
   WD 3  106-157    NTPSPMD-----GQDHR-EGPDRSVSQLAFLKTRLTKLDSASAALISNGPGGSVCFWK
   WD 4  158-202    LF----SGSGLVANFTP-SREKAQVSGIVV--------TSGDTLAYLADQHGFIHVYD
   WD 5  216-254    -P----N-----TVTSW-RAHVSMVTSLEL--------IEGGSIVLSSSLDCTVRLWS

   WD40 Template    TG----E-----CLRTL-SGHTSGVTSVSF--------SPDGKRLVSGSEDGTIKVWD